Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0441 ATGGCCTTAGAGACTTTGAATTCACCCACCGCAGCCACCACTCCCTTCCGGAGTAGCTACCAACAAGAGGAGGAGGAGGAGGAGCTTCACCACCATGAGCCTTGGACCAAAAAAAAGCGCTCCAAACGACCTCGTTTCGACAACCCAACAACAACAGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTTGCACAAAGTGGCAACAACAACAACAAAAACAACAACACAGACAATAACACAAACACCTTGCGCGCAGAATCATCATCCAATTCACAGTCACAATCGCCGCCGCAACAACAACCGCCGCTGAAACTTACTCACAAGTGCAGCGTGTGTGACAAGGCGTTCCCTTCTTACCAAGCACTCGGCGGCCACAAAGCAAGCCACCGCAAATCCTCATCGGAAAATCAAACTCCCGCCGCCGCCGCCGTCAACGACAACGCTTCCGTGTCGACATCCACCGGTAACGGCGGAAAGATGCACGAGTGTTCAATCTGTCACAAGAGCTTCCCAACCGGCCAAGCACTCGGCGGTCACAAGCGGTGCCACTACGAAGGCGGCAAGAGCAGCAATAGTACCAACAGCAACGTCCACGCAAATACCAGCAGCGCCGTCACGACTACCTCCGACGGCGGCGCCGCCTCGGCACACAGCCTCCGTGGATTTGATCTGAACCTCCCCGCGCCGCTGACGGAATTCTGGACGCCACTGGGGATCGGCGGCGGAGATTCCAGGACGAACAAGATCCGAAGCGGTGAGCAGGAGGTGGAGAGCCCTCTGCCGGTAACCGCCAAGAGGCCGCGGTTGTTTTTCGATGGTGGTGAAACGGCGTAG 837 0.5639 MALETLNSPTAATTPFRSSYQQEEEEEELHHHEPWTKKKRSKRPRFDNPTTTEEEYLALCLIMLAQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPAPLTEFWTPLGIGGGDSRTNKIRSGEQEVESPLPVTAKRPRLFFDGGETA* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0441 278 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 271 IPR044653 GO:0003700
Lja5g0441 278 MobiDBLite consensus disorder prediction 69 105 - -
Lja5g0441 278 SMART c2h2final6 162 184 IPR013087 -
Lja5g0441 278 SMART c2h2final6 108 130 IPR013087 -
Lja5g0441 278 Gene3D Classic Zinc Finger 106 184 - -
Lja5g0441 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Lja5g0441 278 MobiDBLite consensus disorder prediction 134 159 - -
Lja5g0441 278 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Lja5g0441 278 MobiDBLite consensus disorder prediction 188 215 - -
Lja5g0441 278 MobiDBLite consensus disorder prediction 20 34 - -
Lja5g0441 278 Pfam C2H2-type zinc finger 108 132 - -
Lja5g0441 278 Pfam C2H2-type zinc finger 162 185 - -
Lja5g0441 278 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Lja5g0441 278 MobiDBLite consensus disorder prediction 1 50 - -
Lja5g0441 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Lja5g0441 278 MobiDBLite consensus disorder prediction 238 278 - -
Lja5g0441 278 MobiDBLite consensus disorder prediction 1 19 - -
Lja5g0441 278 SUPERFAMILY beta-beta-alpha zinc fingers 108 184 IPR036236 -
Lja5g0441 278 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 2 271 - -
Lja5g0441 278 MobiDBLite consensus disorder prediction 187 215 - -
Lja5g0441 278 MobiDBLite consensus disorder prediction 124 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0441 Lja-Chr5 3874432 3875756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0441 1 272 C2H2 Transcription Factor Family AT1G27730 42.652 2.99e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g0441 zf-C2H2_6 2.7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0441 5 3874432 3875756 Lja5g0441 5 3874432 3875756 ECH
Lja1g4106 1 52081387 52082486 Lja5g0441 5 3874432 3875756 ECH
Lja5g3096 5 60620457 60621640 Lja5g0441 5 3874432 3875756 ECH