Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0380 ATGGCTCTCTTTCAAACTCTCTACCTTTCCCTCGCCCTCTCCTTCTTCTTCTTCGCTCTTTCCGCCTTCGCCCTCGACATGTCCATCATCGACTACGACGCCAAGGTTGAAGCCAGAACCGAGAATCACCTCAAGAACATGTACGAGGCGTGGCTTGTGAAGCACCACAAGGTTTACAACGCGTTGGGGGAGAAGGAACGCAGGTTTGAAATCTTCAAGGATAATCTGCGTTTCATTGATCATCATAACAATAGGGAAGGTGAGAAAACCTATAAGTTGGGGCTTAACAAGTTTTCTGATCTCACCAATGAGGAGTACCGGGCCATGTTTTTGGGTACCCGAACCCGAGGTTCACGTGGGTTGCTATCTGGGTCGAAGAGGAGTGATCGTTATGGTTTTCGTGAGGGTGAGGAATTGCCAGCTTCGGTGGATTGGAGGGAGAAAGGTGCGGTTGCTCCTGTTAAAGATCAAGGCCAATGTGGGAGTTGCTGGGCATTTTCCTCGGTTGCGGCGGTGGAGGGGATCAATCAAATTGTGACAGGTGATCTCATCTCCTTGTCTGAGCAAGAGTTGGTGGATTGTGATAGAGGTTATAACATGGGGTGCAATGGAGGTCTTATGGATTATGCTTTTGAGTTTATCAAGCAAAATGGAGGCATTGATACCGAAGATGATTACCCCTATCGTGCTCGCGATCAAACCTGTGATACAAACAGGAAAAATGCTAAGGTAGTCACCATTGATGGATATGAAGATGTTCCGGAAAATGATGAGAACTCCTTGAAGAAGGCTGTTGCACACCAACCTGTTAGTGTTGCCATTGAAGCCGGTGGCAGGGCATTTCAACTTTATGTCTCGGGTGTTTTCACTGGCCTATGTGGAACAGAACTTGACCACGGTGTGGCCGTAGTTGGATATGGAACAGAGAATGGTACTGATTACTGGTTAGTGAAGAATTCATGGGGTGCAGAATGGGGTGAGAATGGTTACATCAAACTGCAGAGGAATGTGCAAACAACCAAGACTGGCAAGTGTGGGATTGCAATGCAGGCATCATACCCCATCAAGAAGGGTGCAAACCCGCCAAATCCTGGTCCTTCTCCTCCATCTCCTGTAACTCCTTCAACAGTGTGTGATGAGTACTACTCTTGCTCAGCTGGAACCACATGCTGCTGCCTCTTTGAGTATGCAGGCTTCTGCTTTGGATGGGGATGCTGCCCTGTTGAATCTGCAACCTGCTGTGATGATGGCTCTAGCTGCTGCCCCCCTGATTACCCTGTCTGTGATACTCAAGCTGGATCTTGCCTATTGAGTAAAAATAACCCCTTTGGAGTTAAAGCTTTGAGGCGAACACCTGCTACAAGCACTTGGAGCATAAGGAAAGCTGGCATGAGAAGTAATTGTGCATAA 1410 0.4787 MALFQTLYLSLALSFFFFALSAFALDMSIIDYDAKVEARTENHLKNMYEAWLVKHHKVYNALGEKERRFEIFKDNLRFIDHHNNREGEKTYKLGLNKFSDLTNEEYRAMFLGTRTRGSRGLLSGSKRSDRYGFREGEELPASVDWREKGAVAPVKDQGQCGSCWAFSSVAAVEGINQIVTGDLISLSEQELVDCDRGYNMGCNGGLMDYAFEFIKQNGGIDTEDDYPYRARDQTCDTNRKNAKVVTIDGYEDVPENDENSLKKAVAHQPVSVAIEAGGRAFQLYVSGVFTGLCGTELDHGVAVVGYGTENGTDYWLVKNSWGAEWGENGYIKLQRNVQTTKTGKCGIAMQASYPIKKGANPPNPGPSPPSPVTPSTVCDEYYSCSAGTTCCCLFEYAGFCFGWGCCPVESATCCDDGSSCCPPDYPVCDTQAGSCLLSKNNPFGVKALRRTPATSTWSIRKAGMRSNCA* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0380 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Lja5g0380 469 SUPERFAMILY Cysteine proteinases 41 355 IPR038765 -
Lja5g0380 469 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 385 - -
Lja5g0380 469 Pfam Papain family cysteine protease 139 355 IPR000668 GO:0006508|GO:0008234
Lja5g0380 469 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Lja5g0380 469 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Lja5g0380 469 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Lja5g0380 469 PANTHER CYSTEINE PROTEASE 30 385 - -
Lja5g0380 469 Pfam Granulin 389 436 IPR000118 -
Lja5g0380 469 Pfam Cathepsin propeptide inhibitor domain (I29) 48 106 IPR013201 -
Lja5g0380 469 SMART GRAN_2 378 435 IPR000118 -
Lja5g0380 469 Gene3D Cysteine proteinases 26 357 - -
Lja5g0380 469 SMART pept_c1 139 355 IPR000668 GO:0006508|GO:0008234
Lja5g0380 469 Gene3D Granulin 375 437 IPR037277 -
Lja5g0380 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Lja5g0380 469 CDD Peptidase_C1A 140 354 IPR039417 -
Lja5g0380 469 SMART Inhibitor_I29_2 48 106 IPR013201 -
Lja5g0380 469 SUPERFAMILY Granulin repeat 376 409 - -
Lja5g0380 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0380 Lja-Chr5 3366377 3368889 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0380 5 3366377 3368889 Lja5g0380 5 3366377 3368889 ECH
Lja1g4138 1 52566953 52569290 Lja5g0380 5 3366377 3368889 ECH
Lja5g3121 5 60948765 60953130 Lja5g0380 5 3366377 3368889 ECH