Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0378 ATGGAGAGAGCAACATTGCTCCTCAAACTACTCCCTCTAATTCTATCTCTTCTAAATGCTCTTCTTACCTCCTCCTTAGCTGCTTCAGAAGATAAACTGTTAGATGCATCCAAGTTGGAGATGTTTGTGGATGAGCTTCCTCATATACCCAAAATCCTTGGCTACAAGGTTTCCAATGGCGTCCCCGAATCAAAGTCTCTCAAGATTGGCATGTTCAAGAAGAAATGGAAATTCCACAGGGATCTCCCTCCAACAACGGTTTACGCTTACGGATTATCCAAACGCACAGCATCAGTACCTGGTCCCACCATCGAGGCCCACTACAGAGTTGGGACCCACGTGACGTGGCAAAACCATCTCCCTCCAAAACACATTCTCCCATGGGACCCATCTATCCCCGTCGCCTCACCCAACACCTCCGGCGGCATCCCCACGGTGGTTCACCTCCACGGCGGGATCCACGAGCCCGAAAGCGACGGAAACGCGAACTCATGGTTCACCGCACAGTTCAAAAAGAGAGGACCCACCTGGACCAAGAAGACCTATCACTATCCAAACAACCAACAACCAGGAAATCTATGGTACCACGACCACGCCATGGGGTTGACCCGGGTCAACCTCCTCGCCGGGTTAATCGGAGCCTACATCATCCGCCACCCTGCCGTCGAATCCCCGCTTGGATTACCCTCCGGCGACGAGCTAGATCGGCCGTTGGTCTTGTTCGATCGCAGCTTCCGGAGCGACGGTTCGATCTACATGAACTCCACCGGAAACAACCCTTCTATCCACCCGCAGTGGCAGCCGGAGTATTTCGGCGACGCCATCATCGTCAACGGCAAAGCCTGGCCACGCCTCACCGTTCGCCGCCGTAGATACAGATTCCGCATCATCAACGCTAGCAACGCGAGATTCTTCAGACTCTTCTTCACCAACGGTCTGAGATTCATACACGTGGCATCTGATTCCGCTTACATCGAGAAACCGATCACCACCAATGAAACCTTACTGGGGCCATCTGAGATCACTGATGTTATTGTTGACTTTTCAGAGTCAAAGAGCAATGTAGCTATTCTGGCCAACGATGCAGCGTATCCTTACCCTTCCGGTGATCCCACTGATGAATTTACCGGTAAGGTTATGAAGTTTACCATCTTACCCGGTAAGCAGGTTGACACGTCACGGATTCCGAAAAAACTGTTGAGTTACCCTGGTGTGGATTTAACCGATTTATCATCCGGTGTGTCGCGTACACGGTACATTGCTATGTATGAGTACGCGAGCAGCGAGGATGAGCCGACTCACTTGTACATGAATGGGAAACCGTACGATGCGCCGGTTACGGAGACTCCGAAGGAGGGGTCCACTGAGGTGTGGAATGTGATAAACTTGACGGATGATAATCACCCACTTCACATTCATTTGGGTTTGTTCAAGGTGTTGGATCAGACGAAGGTGGTTAATTTGGATGAGTTTAAGGATTGCATGGTGAAAATCAACGATGCGATTAAGTGCCACGTGGGTGAGTATGCACGAGGGGAGAAGGTGGAGGTGCCAGGTCATGAGAAAGGGTGGAAGAATGTGTTCAAGATGAGACCAGGGTTCGTGACGAGGATTGTGGTGAGATTTGGTTACATACATACCAATGCATCGTATGAGTTTGATGCAACCGCAGAGCCTGGCTATGTGTATCATTGTCATGTATTGGACCATGAAGACAATGCCATGATGAGACCCTTCAAAATCATCAAGTGA 1752 0.5029 MERATLLLKLLPLILSLLNALLTSSLAASEDKLLDASKLEMFVDELPHIPKILGYKVSNGVPESKSLKIGMFKKKWKFHRDLPPTTVYAYGLSKRTASVPGPTIEAHYRVGTHVTWQNHLPPKHILPWDPSIPVASPNTSGGIPTVVHLHGGIHEPESDGNANSWFTAQFKKRGPTWTKKTYHYPNNQQPGNLWYHDHAMGLTRVNLLAGLIGAYIIRHPAVESPLGLPSGDELDRPLVLFDRSFRSDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRLTVRRRRYRFRIINASNARFFRLFFTNGLRFIHVASDSAYIEKPITTNETLLGPSEITDVIVDFSESKSNVAILANDAAYPYPSGDPTDEFTGKVMKFTILPGKQVDTSRIPKKLLSYPGVDLTDLSSGVSRTRYIAMYEYASSEDEPTHLYMNGKPYDAPVTETPKEGSTEVWNVINLTDDNHPLHIHLGLFKVLDQTKVVNLDEFKDCMVKINDAIKCHVGEYARGEKVEVPGHEKGWKNVFKMRPGFVTRIVVRFGYIHTNASYEFDATAEPGYVYHCHVLDHEDNAMMRPFKIIK* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0378 583 SUPERFAMILY Cupredoxins 43 221 IPR008972 -
Lja5g0378 583 Gene3D - 37 217 IPR008972 -
Lja5g0378 583 SUPERFAMILY Cupredoxins 414 581 IPR008972 -
Lja5g0378 583 Pfam Multicopper oxidase 273 360 IPR001117 -
Lja5g0378 583 Pfam Multicopper oxidase 427 580 IPR011706 GO:0005507|GO:0016491
Lja5g0378 583 Pfam Multicopper oxidase 143 220 IPR011707 GO:0005507
Lja5g0378 583 ProSitePatterns Multicopper oxidases signature 2. 564 575 IPR002355 GO:0005507
Lja5g0378 583 PANTHER MULTICOPPER OXIDASE LPR1 20 579 - -
Lja5g0378 583 CDD CuRO_2_CotA_like 235 384 - -
Lja5g0378 583 CDD CuRO_3_CotA_like 415 581 - -
Lja5g0378 583 Gene3D - 406 583 IPR008972 -
Lja5g0378 583 SUPERFAMILY Cupredoxins 232 351 IPR008972 -
Lja5g0378 583 PANTHER MULTI-COPPER OXIDASE 20 579 IPR045087 -
Lja5g0378 583 CDD CuRO_1_BOD_CotA_like 69 221 - -
Lja5g0378 583 Gene3D - 221 400 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0378 Lja-Chr5 3347335 3351141 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0378 5 3347335 3351141 Lja5g0378 5 3347335 3351141 ECH