Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0370 ATGGCATTCTCACGATCACCCAAGAGATTCTTCAACCTCTTCTCTTCTAATCTTCCACTCTCTAAACCTTACCCTGCTTCGTTGACACCCCTTTCAACTTCACCAACCATCAAACTCCCCCAAAACCTATCTGGGTCTCTCAGAATCCACACTCTCACTCCTCACACACCACATGCCGATAGAATCTGCAAAATCCTATCCAAATCTCCAAATTCCACCATCGACGCCGCTCTTGCCGACCTTCCGGTGGAGGTCTCGCCGGAGTTGGTGGCTGAGGTATTGAACAAGCTGAGCAATGCGGGTGTTCTCGCGCTCTCGTTTTTCCATTGGGCTGAGAAGCAGAAAGGGTTCAAGCACAGCACGGAGAGCTTCCATGCTCTGATTGAGGCACTGGGTAAGATCAGACAGTTCAAGGTGATTTGGAATTTGGTGGAAGACATGAAGCAACGGAAATTGTTGACTAGGGACACTTTTGCCTTCATTGCTCGGAGGTACGCAAGAGCTAGGAAGGTCAAGGAAGCAGTGGAGACGTTTGAGAAGATGGAGAAGTATGGATTGAAGCCAGAAGTGTCGGATTTCAACAAGCTAGTTGATGTTTTGTGCAAGTCTAAGAGCGTTGAGAAAGCACAGGAACTGTTTGATAAAATGCGGCACAGAGGTTTAGTCCCTGATCTCAAGTCCTATACCATTTTGTTAGAAGGGTGGAGTCAGCAGCAAAACTTGTTGAGGGTCAATGAGGTTTGTAGGGAGATGAAGTGTGAGTGTTTTGAGCCTGATGTTGTCACCTATGGTATACTCATCAATGCATATTGTAAGGCCAAAAAATATGATGAGGCCATTGGGTTCTATCATGAGATGCTAGAAAAGAATATGATGCCATCTTCTCACGTATATAGCACTTTGATTAATGGTTTGGGTTCTGATAAGAGGTTGGATGAAGCTCTTGAATTCTATGAAAAATTCAAGGCTAATGGTTTTGCCCCAGAAGCACCTACCTATAATGCTGTTGTTGGAGCTTATTGTTGGTCAATGCGGATGGATGATGCTTATAGGGTCGTTGATGAGATGAAACAATGTGGGGTTGGTCCAAATTCTAGAACATATGACATAATACTTCATCACCTGATAAAGGCTCGAAGAACCCAAGAAGCTTACTCGGTTTTCCAGAGAATGAGTAGTGAGATGGGGTGTGAGCCTACTGTGAGCACTTATGACATCATTTTGAGGATGTTTTGTGATGAGGAGAGATTGGACATGGCAATGGCGGTTTGGGATCAGATGAGAGCCAGGGGAATCCTTCCTGGAATGCATGTGTTTTTTGTGTTAATCAGTGCCTTGTGCCATGCAAATAAGTTGGATGCAGCCTGTAAGTACTTTCAACAAATGTTGGATGTTGGTATTCGGCCTCCTGCAAACTTGTTTAGTACCTTGAAGCAAGCTCTAATTGATGCGGGGATGGAGACTACGGCTATACATTTTGCTTTGAAAATTGATAAACTGAGGAAAACTCCACTAGTTGCTTGA 1524 0.4442 MAFSRSPKRFFNLFSSNLPLSKPYPASLTPLSTSPTIKLPQNLSGSLRIHTLTPHTPHADRICKILSKSPNSTIDAALADLPVEVSPELVAEVLNKLSNAGVLALSFFHWAEKQKGFKHSTESFHALIEALGKIRQFKVIWNLVEDMKQRKLLTRDTFAFIARRYARARKVKEAVETFEKMEKYGLKPEVSDFNKLVDVLCKSKSVEKAQELFDKMRHRGLVPDLKSYTILLEGWSQQQNLLRVNEVCREMKCECFEPDVVTYGILINAYCKAKKYDEAIGFYHEMLEKNMMPSSHVYSTLINGLGSDKRLDEALEFYEKFKANGFAPEAPTYNAVVGAYCWSMRMDDAYRVVDEMKQCGVGPNSRTYDIILHHLIKARRTQEAYSVFQRMSSEMGCEPTVSTYDIILRMFCDEERLDMAMAVWDQMRARGILPGMHVFFVLISALCHANKLDAACKYFQQMLDVGIRPPANLFSTLKQALIDAGMETTAIHFALKIDKLRKTPLVA* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0370 507 Gene3D Tetratricopeptide repeat domain 393 467 IPR011990 GO:0005515
Lja5g0370 507 Gene3D Tetratricopeptide repeat domain 323 392 IPR011990 GO:0005515
Lja5g0370 507 Gene3D Tetratricopeptide repeat domain 254 322 IPR011990 GO:0005515
Lja5g0370 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Lja5g0370 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Lja5g0370 507 Gene3D Tetratricopeptide repeat domain 98 253 IPR011990 GO:0005515
Lja5g0370 507 Pfam PPR repeat 441 467 IPR002885 -
Lja5g0370 507 Pfam PPR repeat 164 186 IPR002885 -
Lja5g0370 507 Pfam PPR repeat family 258 305 IPR002885 -
Lja5g0370 507 Pfam PPR repeat family 192 234 IPR002885 -
Lja5g0370 507 Pfam PPR repeat family 332 376 IPR002885 -
Lja5g0370 507 TIGRFAM PPR: pentatricopeptide repeat domain 403 434 IPR002885 -
Lja5g0370 507 TIGRFAM PPR: pentatricopeptide repeat domain 193 224 IPR002885 -
Lja5g0370 507 TIGRFAM PPR: pentatricopeptide repeat domain 297 328 IPR002885 -
Lja5g0370 507 TIGRFAM PPR: pentatricopeptide repeat domain 367 401 IPR002885 -
Lja5g0370 507 TIGRFAM PPR: pentatricopeptide repeat domain 161 188 IPR002885 -
Lja5g0370 507 TIGRFAM PPR: pentatricopeptide repeat domain 442 469 IPR002885 -
Lja5g0370 507 TIGRFAM PPR: pentatricopeptide repeat domain 261 294 IPR002885 -
Lja5g0370 507 TIGRFAM PPR: pentatricopeptide repeat domain 332 364 IPR002885 -
Lja5g0370 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Lja5g0370 507 PANTHER OS01G0505500 PROTEIN 57 504 - -
Lja5g0370 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Lja5g0370 507 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 57 504 - -
Lja5g0370 507 SUPERFAMILY HCP-like 165 327 - -
Lja5g0370 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 399 IPR002885 -
Lja5g0370 507 Pfam PPR repeat 395 428 IPR002885 -
Lja5g0370 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Lja5g0370 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Lja5g0370 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0370 Lja-Chr5 3282094 3283764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0370 170 486 Glycosyltransferase AT1G05670 25.868 5.26e-36 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0370 5 3282094 3283764 Lja5g0370 5 3282094 3283764 ECH