Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0360 ATGGCTATTCCCTATCCCCATTTCATCTCCTCCGAGAAAGCAGCCATGGAAGCAGGTCTTCTCGCACCATCCTCCATCATTCTCACCCAAGACGATTTGAAGAAAATCGCCGCCTACAAAGCCGTCGAGTATGTCGAATCCGGCATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCAAACACGCCGTCGCCCGAATCGGTGAGCTTCTCCGCCAGGGGAAGCTCACCGACATCGTCGGAATCCCCACCTCCACCATGACTCACGACCAGGCTCTCTCCGTCGGAATCCCCTTATCCGATCTCGACTCCCACCCCGTCGTTGATCTCGCCATTGACGGCGCCGACGAGGTTGATCCTTATCTCAACCTCGTCAAGGGGCGCGGTGGGTCGCTTCTCAGGGAGAAGATGGTGGAGGCTGCATGCAAGAAGTTTGTGGTCATTGTGGATGAGTCCAAGCTCGTGAACTATATAGGAGGAAGTGGGTTGGCTATGCCTGTTGAGGTTATTCAGTTTTGCTGGAAATTCACTGCTTCAAAGCTTCAATCCCTCTTTGAGGAATCTGGGTGTGTTGCCAAGCTCAGAACTGTTGGTGAGAAGGAGGAACCCTTTGTCACTGACAATGGGAACTATATTGTGGATTTGTATTTCAAGGAGAGTATTGGTGATTTGAAGGCTGCCAGTGATTCAATTCTGCAGATTGCTGGTGTTGTTGAGCATGGAATGTTTCTGGATATGGCTACCACTGTTATTATTGCAGGTGAACTTGGGCTAACGGTGAAAAACAAATAG 789 0.5158 MAIPYPHFISSEKAAMEAGLLAPSSIILTQDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVARIGELLRQGKLTDIVGIPTSTMTHDQALSVGIPLSDLDSHPVVDLAIDGADEVDPYLNLVKGRGGSLLREKMVEAACKKFVVIVDESKLVNYIGGSGLAMPVEVIQFCWKFTASKLQSLFEESGCVAKLRTVGEKEEPFVTDNGNYIVDLYFKESIGDLKAASDSILQIAGVVEHGMFLDMATTVIIAGELGLTVKNK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0360 262 PANTHER RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED 1 262 - -
Lja5g0360 262 Gene3D - 33 254 - -
Lja5g0360 262 TIGRFAM rpiA: ribose 5-phosphate isomerase A 33 256 IPR004788 GO:0004751|GO:0009052
Lja5g0360 262 Gene3D - 156 240 - -
Lja5g0360 262 PANTHER ISOMERASE, PUTATIVE-RELATED 1 262 - -
Lja5g0360 262 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 162 243 - -
Lja5g0360 262 CDD RPI_A 33 253 IPR004788 GO:0004751|GO:0009052
Lja5g0360 262 SUPERFAMILY NagB/RpiA/CoA transferase-like 29 213 IPR037171 -
Lja5g0360 262 Hamap Ribose-5-phosphate isomerase A [rpiA]. 30 260 IPR020672 GO:0004751|GO:0009052
Lja5g0360 262 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 79 254 IPR004788 GO:0004751|GO:0009052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0360 Lja-Chr5 3208692 3210095 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0360 5 3208692 3210095 Lja5g0360 5 3208692 3210095 ECH
Lja5g0360 5 3208692 3210095 Lja1g6078 1 111646511 111648475 PCT