Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0356 ATGGGGGATCACTTTGATTTGCTCGTTGATCGATTGCTTACTGAATCCACATTAGAAGCTGCACTCGAAAGCCGAAAGCGATCAATGCAGGCCGCTTGCTCGGTGGTGAATGACACGAAAGTTGATATCTCTTTGATAAAGATGGGTCCAGGTGATATCAAATATCCAGGGAAAATGGTGGAGTGCAGGATATGTCATGACGATGACGAGGATTCCAATATGGAGGCACCCTGCTCTTGTTGTGGTAGTTTGAAGTACGCCCACCGTAGATGTATACAGCGATGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCCATTCAAGCCTGGTTATACAGCTCCTCCTCCACTTTTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCAAGAAGAGACTTAAATAGTGCTCATTTGGTTAGCATGGTGCCAACCGACCCGAACCTTCTCAATTCTAACTATGATCAGGATTCACCTTCTACTTCAGGAAGTTTGCTATGCTGCCGTTCAGTTGCTGTCATCTTTATGGTTCTACTGATTTTACGACATGCACTTCCCCTTGTAATTACTGGAAACAAGGAGTATTCTTTCCCACTTTTTATGCTGGTATTTTTTCGGACTGCTGGAGTTGTTCTTCCTATATACTTCATGGTCAGAGCAGTGACTCTAATTCAGCGACACCGGAGACAACATCGAGAGCTTCCTAATGCCCTGGTCAGTTTATCTGACAATGAAATTGAGCAAGGCGCTTTGCAGCATCAGCCTCATGTCATACATCTACTTTAA 810 0.4444 MGDHFDLLVDRLLTESTLEAALESRKRSMQAACSVVNDTKVDISLIKMGPGDIKYPGKMVECRICHDDDEDSNMEAPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSAHLVSMVPTDPNLLNSNYDQDSPSTSGSLLCCRSVAVIFMVLLILRHALPLVITGNKEYSFPLFMLVFFRTAGVVLPIYFMVRAVTLIQRHRRQHRELPNALVSLSDNEIEQGALQHQPHVIHLL* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0356 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Lja5g0356 269 PANTHER OS01G0121200 PROTEIN 1 266 - -
Lja5g0356 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 266 IPR033275 -
Lja5g0356 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Lja5g0356 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 117 IPR013083 -
Lja5g0356 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Lja5g0356 269 SUPERFAMILY RING/U-box 60 112 - -
Lja5g0356 269 SMART ringv_2 61 108 IPR011016 GO:0008270
Lja5g0356 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0356 Lja-Chr5 3187031 3192093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0356 61 108 C3H Transcription Factor Family AT2G37950 49.020 1.20e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0356 5 3187031 3192093 Lja5g0356 5 3187031 3192093 ECH