Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0345 ATGAGCAATCGAGGTGAAGAAGAAGAAGAAGAAGCATTATCGAGAAGCGCAAGAGCTGCAGAAGATCTCTACCACCTTCGAGACACTTTTTTCCCACCCAACCCTCATGACAGAATCTCGTCGTTGCAGCACCATTCCGATCTCGCTCTCAATCTCCTCGATTCCATTCCTCCAGAACAAAGAAAATCACCGATGCAACGTGCAACATTTGAATATCTTAGAGGGAAGGTGTTGGATGTATTTCCTGACTACAGGAAAGACGCTGAGGATCACCTATCGAAAGCTGTTAAGTTAAATCCATCTCTTGCAGATGCTTGGCTATGTTTAGGTAACTGCATATGGAAGAAGGGAGATTTGCCTGCTGCAAAAAACTGCCTCAGTCTTGCATTGAACAAGGGTCCTAACAAAAAGATTCTTTGTCAATTATCAATGCTTAAAAGAAAAATGTCTCAAGGTGCGGAGAATCAGTCAGAACTTGTTGAAGAAAGCATTGAACATGCCAAGGAAGCAATCACTTTGGACGTCAAGGATGGGAACTCTTGGTATAATCTTGGAAATGCATACCTTACAAGTTTTTTTGTCACTGGAGCTTGGGATCATGCCAAACTTTCACATTCTTTAAAAGCATATCAAAATGCTGAGAAAGATGAAAGAATGAAGTCCAATCCTGACCTATATTTTAATTATGCCACCGTTAACAAATATCTAGAGAACTATGAGAGGGCCCTTAGTGGATTTGAGGCTGCTGCTCTAAAGGATCCAGGTCTCAATGCTGCAGAGGAGGCTCAGAAGATAGTCAACTTACTTGACAAGGTGGACAATCTTTTGAGGGGACATGTAAGAGCTAAGAGAATAGCATCTTTGGTATCATCGTTGGCTGCTGTTAGTTTAAAATCGTCACACAAAGGAGTTACCATTGACCTTCTGTCAGAGGGTCTGAATAGAGCTCTAGCAGTAGAGGGGAAGGTGCTTTTCTTTGTTAGGAGTGAGAGTGTTGCTCCCCTATACTATGTGCTTTGTGATTCAAATCAAACTTGCTTTGTTCTCTCAGTTTATGGTGTACGTTTTGATGTGATTAAAGAAGGAGATCAGCTAACATTGCTCGACCCTTTATTTCGGGATGTTGATTTGTCTTGGAAGGAGAAGCATTATCAGTTCAAGTCTATACGCCTGGATTTCTATGAACAAGTGCTTGTTAATGGAAAAGCTCTGACTCCTCAACAAGCTATCCGTTCATCAATACTTGCACAACATAAACCTTGA 1263 0.4141 MSNRGEEEEEEALSRSARAAEDLYHLRDTFFPPNPHDRISSLQHHSDLALNLLDSIPPEQRKSPMQRATFEYLRGKVLDVFPDYRKDAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLPAAKNCLSLALNKGPNKKILCQLSMLKRKMSQGAENQSELVEESIEHAKEAITLDVKDGNSWYNLGNAYLTSFFVTGAWDHAKLSHSLKAYQNAEKDERMKSNPDLYFNYATVNKYLENYERALSGFEAAALKDPGLNAAEEAQKIVNLLDKVDNLLRGHVRAKRIASLVSSLAAVSLKSSHKGVTIDLLSEGLNRALAVEGKVLFFVRSESVAPLYYVLCDSNQTCFVLSVYGVRFDVIKEGDQLTLLDPLFRDVDLSWKEKHYQFKSIRLDFYEQVLVNGKALTPQQAIRSSILAQHKP* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0345 420 SUPERFAMILY TPR-like 73 246 IPR011990 GO:0005515
Lja5g0345 420 Coils Coil 150 170 - -
Lja5g0345 420 Pfam Tetratricopeptide repeat protein 5 OB fold domain 302 412 IPR032076 -
Lja5g0345 420 Gene3D Tetratricopeptide repeat domain 5 279 IPR011990 GO:0005515
Lja5g0345 420 Gene3D - 280 419 IPR038645 -
Lja5g0345 420 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 17 344 - -
Lja5g0345 420 SMART tpr_5 103 136 IPR019734 GO:0005515
Lja5g0345 420 SMART tpr_5 223 256 IPR019734 GO:0005515
Lja5g0345 420 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 17 344 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0345 5 3110057 3117420 Lja5g0345 5 3110057 3117420 ECH