Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0339 ATGGCTTCACGCAGACTCGCATCGTCTCTGATTCGATCTTCCCTCCGTCGATCTCAATCCAAACCCTCCATTTCCGCTTCCGCATCGCGGATTTCCCAATCCCGACCTGCTTCCGCCGCCCCTTACGGCTACCTCCTCAACCGCGTCGCCGAGTACGCCACCTCCGCCGCGGCTCCCGCTGCTGCTCCTTCCTCGCCTCCGGCGAAGAAGGAGGTCCCCGGTGGTGGGAAGATCACTGATGAGGTTACTGGAAAAGGCGCGATCGGGCAGGTTTGCCAGGTCATCGGTGCCGTCGTCGATGTCAGATTTGAGGAGGGTTTGCCTCCGATCTTGACCGCGCTTGAGGTTCTGGATCACACTTCGAGGTTGGTGTTGGAAGTCGCGCAGCATTTGGGTGAGGGTGTTGTTCGGACTATTGCTATGGATGGTACTGAAGGGGTTGTTCGAGGGTGGCGCGTGCTCAACACTGGGTCTCCTATTACTGTTCCTGTTGGAAGGGTTACCCTTGGTAGAATCATGAATGTTATTGGAGAGCCTATTGACGAGAAGGGTGACTTCAAAACCGAGCATTATCTGCCCATTCATAGAGAAGCTCCTTCTTTTGTTGAGCAAGCAACTGAACAGCAAATTCTTGTTACTGGGATCAAGGTTGTTGACATGCTTGCACCATACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTCGGAAAAACTGTGCTTATTATGGAACTTATTAACAATGTCGCCAAGGCCCATGGTGGTTTCTCTGTATTTGCTGGAGTTGGGGAACGAACCCGAGAGGGTAATGATTTGTACAGAGAAATGATCGAGAGTGGTGTTATTAAGCTAGGTGATAAGCAGAGTGAAAGCAAATGCGCTCTTGTGTACGGTCAAATGAATGAGCCCCCGGGTGCTCGTGCCCGTGTTGGTCTCACTGGTCTTACTGTGGCTGAACACTTCCGTGATGCAGAAGGACAGGATGTGCTTCTTTTTGTTGACAACATTTTCCGTTTTACCCAAGCTAACTCTGAGGTGTCTGCTTTGCTTGGACGTATCCCATCTGCTGTCGGTTACCAACCGACACTGTCTACTGATCTTGGAGGTCTCCAAGAGCGTATTACAACAACCAAGAAGGGTTCAATTACTTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTCGCTCACTTGGATGCTACAACTGTGTTGTCACGACAGATCTCTGAGCTTGGTATCTATCCTGCTGTCGACCCCTTGGATTCCACATCTCGTATGCTTTCCCCACTTATTTTGGGTGAGGACCACTATGAAACTGCTCGTGGTGTCCAGAAGGTTCTTCAAAACTACAAGAATCTTCAGGATATCATTGCTATTTTGGGAATGGATGAGCTCAGTGAAGACGATAAATTGACTGTTGCCCGTGCCCGAAAGATTCAAAGATTCTTGAGCCAGCCTTTCCACGTGGCAGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGACTTGAAGGAGAACATCACCAGTTTCCAGGGCGTGTTGGATGGCAAGTACGATGATCTCCCCGAGCAGTCATTTTACATGGTTGGTGGTATTGAGGAGGTGATTGCTAAGGCAGAAAAGATTTCCAAGGAATCAGCAACATCTTGA 1683 0.4991 MASRRLASSLIRSSLRRSQSKPSISASASRISQSRPASAAPYGYLLNRVAEYATSAAAPAAAPSSPPAKKEVPGGGKITDEVTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDHTSRLVLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDFKTEHYLPIHREAPSFVEQATEQQILVTGIKVVDMLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKENITSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKISKESATS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0339 560 Gene3D - 438 560 IPR024034 -
Lja5g0339 560 Gene3D ATP synthase, F1 beta subunit 1 52 IPR042079 -
Lja5g0339 560 SMART AAA_5 226 498 IPR003593 -
Lja5g0339 560 CDD F1-ATPase_beta 159 440 - -
Lja5g0339 560 CDD ATP-synt_F1_beta_C 442 549 - -
Lja5g0339 560 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 435 IPR000194 GO:0005524
Lja5g0339 560 MobiDBLite consensus disorder prediction 1 37 - -
Lja5g0339 560 Gene3D - 160 437 IPR027417 -
Lja5g0339 560 ProSitePatterns ATP synthase alpha and beta subunits signature. 426 435 IPR020003 GO:0005524
Lja5g0339 560 PIRSF ATPase_subunit_beta 6 559 - -
Lja5g0339 560 Hamap ATP synthase subunit beta [atpB]. 86 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lja5g0339 560 CDD ATP-synt_F1_beta_N 87 160 - -
Lja5g0339 560 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 558 - -
Lja5g0339 560 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 438 554 - -
Lja5g0339 560 MobiDBLite consensus disorder prediction 1 36 - -
Lja5g0339 560 Gene3D - 77 159 - -
Lja5g0339 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 441 IPR027417 -
Lja5g0339 560 TIGRFAM atpD: ATP synthase F1, beta subunit 88 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lja5g0339 560 Pfam ATP synthase F1 beta subunit 1 48 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Lja5g0339 560 PANTHER ATP SYNTHASE 3 558 - -
Lja5g0339 560 MobiDBLite consensus disorder prediction 58 77 - -
Lja5g0339 560 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034|GO:1902600
Lja5g0339 560 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 85 159 IPR036121 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0339 Lja-Chr5 3039553 3043470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0339 124 496 Primary Pumps ATPases(2) AT1G20260 28.928 5.45e-30 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0339 5 3039553 3043470 Lja5g0339 5 3039553 3043470 ECH