Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0338 ATGGAAAGCGGTAAATCGAATCTTGAGACTCCACTGACTTCAAACCAACATGAACTCCACTCCGAGACATTTGAACAATGTTGCTGCCTCAGAGAAGATATTGTTAAGGAAGTTAAATTGCAACTGCGTCTATCAGTGCCGCTTATTGCTGTTAGCCTGCTACAATTTAGCTTACAACTGATATCAATTATGTTTGTTGGCCATCTTGGGAAGCTTCCTCTTTCAGGTGCTTCCTTGGGCAACTCCTTCGCCTCAGTCACTGGTTTTAGTGTTTTGTTAGGAATGGGGAGTGCATTGGAGACACTATGTGGCCAAGCCTATGGAGCCAAGAAATATCACATGCTAGGTGTTCACACTCAAAGGGCAATGCTTGTCCTTCTAGGACTAAGCATTCCCTTGGCATTAATTTGGTTCTACACAAGCAACATTCTCATAGCATTAGGCCAAGACCATGAGATATCAGCCGAAGCAGGAACGTTCAACCGGTGGATGATCCCTGCCCTTTTTGCTTACGGTCTCCTTCAATGCCTCAACAGGTTTCTACAAACCCAAAACAATGTTTTTCCAATGCTGGTAAGCTCTGGAATCACAGCTTTGGTGCATGTTCTATTTTGTTGGGTTTTAGTCTTCAAATTTGAGTTGGGAAGCAAAGGAGCAGCCTTGGCAATCAGTATGTCATGTTGGGTTAATGTGTTCCTGTTATTATTGTACATAAATTTAGCTTCAGCTTGTGATTCCACTTGGAAAGGGTTTACCAAAGAGGCCTTGGATGATGTTCTTAGTTTCTTAAAGCTTGCAGTTGCCTCTGCAGTTATGATATGTTTTGAATATTGGTCCTTTGAGATGGTTGTTCTTCTCTCGGGTCTTCTGCCAAATCCACAACTAGAGACGTCAGTTTTATCAATAAGCCTTAATACCTGTTGGATGGTGTATATGATCTCTGTTGGTCTTGGAGGTGCCATAAGCACCCGAGTGTCAAATGAATTGGGTGGTGGGAACGCACAAGGTGCACTTTTGGCTCTCCGTGTCATGGTTGTGATTTCCATACTAGAGGGTACAGCAGTAGGATTGGTTACCATTTTGGTAAGGAATGTCTGGGGAAAGCTCTACAGCAATGATGATGAAGTTATCAAATATGTTGCCAAGATGATGCCTCTGCTGGCACTTTCTGACTTCCTTGATGGTTTCCAATGTGTGCTTTCAGGGGCTGCCAGAGGGTGTGGTTGGCAAAATCTATGTGCATTTATGAACCTTGGCGCTTACTATGTTGTGGGAATTCCTTGTGCTATCATATTCGCCTTTGTCTTCCATATTGGTGGGATGGGACTTTGGATAGGAATCATATGTGCACTTTCTGTTCAAGGGATAGCCCTGATTACAGTAAATGCCTGCACAGATTGGGATAGAGAGGCTAGGAAAGCAGTTCATTCGACTCTGTCTCTGAATACTAAACTAGTTACAGAAACAGAACCATAG 1476 0.4322 MESGKSNLETPLTSNQHELHSETFEQCCCLREDIVKEVKLQLRLSVPLIAVSLLQFSLQLISIMFVGHLGKLPLSGASLGNSFASVTGFSVLLGMGSALETLCGQAYGAKKYHMLGVHTQRAMLVLLGLSIPLALIWFYTSNILIALGQDHEISAEAGTFNRWMIPALFAYGLLQCLNRFLQTQNNVFPMLVSSGITALVHVLFCWVLVFKFELGSKGAALAISMSCWVNVFLLLLYINLASACDSTWKGFTKEALDDVLSFLKLAVASAVMICFEYWSFEMVVLLSGLLPNPQLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGGGNAQGALLALRVMVVISILEGTAVGLVTILVRNVWGKLYSNDDEVIKYVAKMMPLLALSDFLDGFQCVLSGAARGCGWQNLCAFMNLGAYYVVGIPCAIIFAFVFHIGGMGLWIGIICALSVQGIALITVNACTDWDREARKAVHSTLSLNTKLVTETEP* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0338 491 PANTHER PROTEIN DETOXIFICATION 20 477 - -
Lja5g0338 491 TIGRFAM matE: MATE efflux family protein 47 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0338 491 CDD MATE_eukaryotic 37 473 IPR045069 GO:0042910|GO:1990961
Lja5g0338 491 Pfam MatE 269 430 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0338 491 Pfam MatE 47 207 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0338 491 PANTHER MULTIDRUG RESISTANCE PROTEIN 20 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0338 Lja-Chr5 3032172 3038124 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0338 5 3032172 3038124 Lja5g0338 5 3032172 3038124 ECH