Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0337 ATGGAAGAAGGTCTTCTAGCAAAACAGAGGGATGAGAAAACAGAGCATGAACAGCAGAGCAAAGTAACATGGGAAATTTACGGTCAAGAAATGAAGAGGATTTGCCACATAGCAGGGCCTATGGTGGCGGTGATTTCATCCCAGTATTTGTTGCAGGTTGTTTCAACCATGATTGTTGGTCATCTTGGTGAGCTCTATCTCTCTAGCGCCTCCTTAGCCATCTCCTTTACTGGTGTCACGGGTTTCAGTTTTCTTATGGGAATGGCTAGTGGACTTGAAACTATCTGTGGACAAGCTTATGGAGCTCAACAATATCACAGAATTGGAATGCAAACCTACACTGCCATATTCTCCCTCATAATTGTTTGCATTCCATTGTCTTTCATTTGGATCAACATAGAAAATATTCTAGTTTTCGTAGGCCAGGACCCTCTAATTGCACATGAAGCAGGGAGATTCACAATCTGGCTTGTTCCAGCACTTTTTGCATATGCAATTCTGCAGCCACTAGTTCGGTATTTCCAAATACAAAGCTTGATTCTTCCCATGCTTTTAAGCTCTTGTGTCACTCTTGTTATCCATGTTCCACTATGTTGGGCCTTGGTTTTCAAGACTGAGCTGAATAATATTGGTGGAGCAATAGCAATGAGCATCTCGATCTGGTTAAATGTGATTTTTCTTGGATTGTACATGAGATACTCTTCTGCGTGTGCGAAAACCCGTGCTTCGATTTCTATGGAGATGTTCCGAGGAATCGGGGAGTTCTTTCGTTTTGCTGTACCTTCTGCAGTCATGATTTGCCTTGAATGGTGGTCATATGAACTGCTTGTCTTGCTGTCTGGTCTGTTACCAAATCCACAACTTGAAACTTCAGTTCTATCAGTTTGTCTCAATACCATTGCAACTCTCTATACAATACCCTTTGGAATTGGTGCTGCAGCAAGCACAAGAGTTTCAAATGAATTAGGAGCTGGGAATCCATATGCTGCCCGCGTAGCCGTGTTGGCTGCAATGTCTCTTGCAGCCATAGAGACGAGCATAGTGAGCGCATCGCTCTTCGCCTGCCGCCACGTTTTCGGTTACATCTTCAGCAATGAAAAGGAAGTTGTTGATTATGTCACTGTCATGGCACCTCTGGTTTGTTTATCTGTCATTCTTGACAGCGTACAAGGTGTCCTCGCAGGGATTGCTAGAGGTTGTGGATGGCAACACCTTGGGGTTTATGTTAATTTAGGGGCCTTTTACCTATGTGGGATTCCAGTTGCAGCTGCATTGGCATTTTGGATAAAAGTGGGAGGAAAAGGACTTTGGATTGGTATTCAAGTTGGTGCTCTTGTTCAATCTGTTCTCCTTTCTATCATAACATGTTGCATAAACTGGGAACAACAGGCAATGAAGGCTAGAAAGAGGTTACGTGATGATCAATTTTCAGCAGACAGTAGATTGATATAA 1452 0.4311 MEEGLLAKQRDEKTEHEQQSKVTWEIYGQEMKRICHIAGPMVAVISSQYLLQVVSTMIVGHLGELYLSSASLAISFTGVTGFSFLMGMASGLETICGQAYGAQQYHRIGMQTYTAIFSLIIVCIPLSFIWINIENILVFVGQDPLIAHEAGRFTIWLVPALFAYAILQPLVRYFQIQSLILPMLLSSCVTLVIHVPLCWALVFKTELNNIGGAIAMSISIWLNVIFLGLYMRYSSACAKTRASISMEMFRGIGEFFRFAVPSAVMICLEWWSYELLVLLSGLLPNPQLETSVLSVCLNTIATLYTIPFGIGAAASTRVSNELGAGNPYAARVAVLAAMSLAAIETSIVSASLFACRHVFGYIFSNEKEVVDYVTVMAPLVCLSVILDSVQGVLAGIARGCGWQHLGVYVNLGAFYLCGIPVAAALAFWIKVGGKGLWIGIQVGALVQSVLLSIITCCINWEQQAMKARKRLRDDQFSADSRLI* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0337 483 Pfam MatE 40 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0337 483 Pfam MatE 261 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0337 483 CDD MATE_eukaryotic 30 464 IPR045069 GO:0042910|GO:1990961
Lja5g0337 483 PANTHER PROTEIN DETOXIFICATION 11 470 - -
Lja5g0337 483 TIGRFAM matE: MATE efflux family protein 40 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0337 483 PANTHER MULTIDRUG RESISTANCE PROTEIN 11 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0337 Lja-Chr5 3024937 3029538 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0337 5 3024937 3029538 Lja5g0337 5 3024937 3029538 ECH
Lja5g0337 5 3024937 3029538 Lja2g2160 2 24398136 24400810 ECH