Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0336 ATGGAAAAGGGTCTATTGGAGAAAGAAAGAGAGGGTCTCTCATCAAGCATAACATGGGGTGTCCTTGTTCAAGAGGTGAAAAGTCTTGGTTATCTAGCGGGGCCTATGATTTTTGTGACTTTGTCACAGTATTTTCTACAAATTATTTCAATGATGATGGTTGGTCACTTAGGTAAACTTGCTCTCTCTAGCACTGCGATTGCTATATCTCTCTGTGCTGTCTCTGGCTTCAGTTTTCTTTTTGGAATGTCATGCGCCCTAGAAACTCAATGTGGACAAGCATATGGAGCGCAACAATATCGAAAATTTGGTGTACAAATTTACACTGCTATAGTCTCTCTTAATTTAGCTTGTCTTCCTCTGTCTCTTTTATGGATTTACTTGGAGAAGATACTCACTTTACTTGGCCAAGACCCTTTGATTTCACAAGAAGCTGGAAAATTTGCTCTGTGCATGATTCCTGCTCTTTTTGCTTATGGAACACTTCAGGCCCTGGTTCGGTACTTTCTGATGCAAAGTTTGACAGGTCCTCTTGTCATAAGTGCTTTGGTTACTCTTTGCTTCCATGTAGCTTTTTGTTGGCTACTAGTTTTCAAATCTGGATTAGGAAACTTAGGAGCAGCATTGTCAATTGGTACTTCATATTGGCTGAATGTGATTTTACTTGGATTATATATGAAATTTTCTGCTGAATGTGAAAAGACTCGGTTTCCTATTTCAATGGAGATCTTCCATGGGATAGGAGAATTCTTCCTCTACGCTATTCCTTCAGCTGGAATGATATGCCTTGAGTGGTGGTCATTTGAGCTTCTTACCTTGCTTTCTGGTCTTCTACCAAATCCAGAGCTAGAAACTTCTGTATTATCCATATGTTTATCAATCACCACAACAATCTATACAATACCGGAAGCAATTGGCTCAGCAGCAAGCACTAGAGTTTCAAATGCATTAGGAGCTGGAAGGCCACAAGCAGCGCGAGTGTCTGTTTCAGCTGCCATGACTCTTGCAGCTTCTGAGGCTCTTCTGGTGAGCTCAATCCTTTTTGCGTGCCGCCGTGTTTTAGGTTATGTATTTAGCAATGAGCAGGACATTGTGGATTATGTCACAGATATGGTTCCTCTCTTAAGTCTATCTGTTATACTGGACAGCTTGCATGGTACCCTTTCAGGTATTGCTAGAGGATGTGGGTGGCAGCACATAGGAGCCTATGTGAATCTTGGAGCCTATTATGGTTTTGGAATTCCAATTGCTGCTACATTGGGTTTCTGGGTACAGTTGAGAGGAAAAGGCCTATGGATTGGGATAATGATTGGTGCATTCTGTCAAACAGTTATGCTATCCCTCATAACAAGTTTTACAAACTGGGAAAAACAGATTAGTATGAGCAAATGGAGTAGAATCCTTGAAGGTTTCTCAGCTTGTTTAATTGACATTGGTGAAGATTCAACCTTTGGTTGCAGAAAAAGATCAAACTGCAGTTACATTAAGGAGGAAAAAGTTTTCATCCCAGGAAAATTATAA 1521 0.4057 MEKGLLEKEREGLSSSITWGVLVQEVKSLGYLAGPMIFVTLSQYFLQIISMMMVGHLGKLALSSTAIAISLCAVSGFSFLFGMSCALETQCGQAYGAQQYRKFGVQIYTAIVSLNLACLPLSLLWIYLEKILTLLGQDPLISQEAGKFALCMIPALFAYGTLQALVRYFLMQSLTGPLVISALVTLCFHVAFCWLLVFKSGLGNLGAALSIGTSYWLNVILLGLYMKFSAECEKTRFPISMEIFHGIGEFFLYAIPSAGMICLEWWSFELLTLLSGLLPNPELETSVLSICLSITTTIYTIPEAIGSAASTRVSNALGAGRPQAARVSVSAAMTLAASEALLVSSILFACRRVLGYVFSNEQDIVDYVTDMVPLLSLSVILDSLHGTLSGIARGCGWQHIGAYVNLGAYYGFGIPIAATLGFWVQLRGKGLWIGIMIGAFCQTVMLSLITSFTNWEKQISMSKWSRILEGFSACLIDIGEDSTFGCRKRSNCSYIKEEKVFIPGKL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0336 506 PANTHER MULTIDRUG RESISTANCE PROTEIN 6 466 - -
Lja5g0336 506 Pfam MatE 256 418 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0336 506 Pfam MatE 35 195 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja5g0336 506 PANTHER PROTEIN DETOXIFICATION 6 466 - -
Lja5g0336 506 CDD MATE_eukaryotic 25 460 IPR045069 GO:0042910|GO:1990961
Lja5g0336 506 TIGRFAM matE: MATE efflux family protein 35 432 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0336 Lja-Chr5 3020218 3023852 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0336 5 3020218 3023852 Lja5g0336 5 3020218 3023852 ECH
Lja5g0336 5 3020218 3023852 Lja2g2158 2 24384925 24388267 ECH
Lja5g0336 5 3020218 3023852 Lja4g0047 4 391471 395732 ECH