Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0332 ATGGCTGCTACTTTCACATTTCCATCCTCTGCCTTTGTTGTTAGGTGCTGTGCCATGAGAGAAAACCATGACCAGCATAAGCAACAATTGAACAGCAACAGCATCAGAGTGAATGGGAATAAAGTTGAGACACTTAGCCACAAAGCTGAATCATCAGCAGCTACTACCACTACTACTCTTCTCAGTTTTGCTGAGAGTGGCCAACGCCAGAATATCCCAACAAAGAAGCAGTTGGTTGATCCTCATCGCCAAGGGCTCATTGCTGAAGGTGGAGTTGTTTACAGACAGACTGTTGTTATAAGGTCCTATGAGGTTGGCCCTGATAAAACTGCAACACTTGAGAGCATCCTCCATTTTCTTCAGGAAACAGCATTAAACCATGTATGGATGTCTGGACTGCTGGGTGATGGTTTTGGGGCAACACATGGAATGATAAGGAACGATCTCATTTGGGTTGTCTCAAGAATGCAAGTTCTCATTGATTACTATCCCATCTGGGGAGAGGTGGTTGAAATTGAAACATGGGTTGGAGCATCAGGCAAGAATGGAATGCGGCGGGACTGGCTGATAAGAAGCCAAGCAACAGGCCAAGTTTTTGCACGTGCAACAAGCACATGGGTGATGATGAACCGGAAAACAAGACGCCTCTCCAAACTGCCAGAAGAGGTGAGGGGTGAACTTGCACCTTGGTTTCTAGAGAAGCAAGCAATAAAAGAGGATACTCCTGAAAAGATTGTCAAGTTGGACAAAGAAGCTAAATACATGAATTCTAATTTGAAGGCCAAGAGAAGTGATTTGGACATGAACCAACATGTTAATCATGTGAAGTATGCAAGATGGATGCTGGAGACTATCCCAGAGCAAATTCTTGAGAGCCACCAATTATCTGGTATCATACTAGAGTATAGAAGGGAGTGCAAAAGCTCAGATATAGTTCAATCACTATGTGAACCAGAAGAAGATGAAATACTTCATGGTGTGGTGGAACCAGATTACTACACAAGTCTGCTCAATGGGTTGTCCTTGGCATCATCAGATATTATAAATGGTGGTGGGGGAGTCCTGACCTGCCTTGAACAGAGGCCAATAAGGTATACACACTTGTTACAACTCAATGGAGACAATCAAAGAGATGAAATTGTCAGAGGAAGGACAATGTGGAAGAGGAAGTTCACTACAATTCCATTTTCCACCTAG 1197 0.4361 MAATFTFPSSAFVVRCCAMRENHDQHKQQLNSNSIRVNGNKVETLSHKAESSAATTTTTLLSFAESGQRQNIPTKKQLVDPHRQGLIAEGGVVYRQTVVIRSYEVGPDKTATLESILHFLQETALNHVWMSGLLGDGFGATHGMIRNDLIWVVSRMQVLIDYYPIWGEVVEIETWVGASGKNGMRRDWLIRSQATGQVFARATSTWVMMNRKTRRLSKLPEEVRGELAPWFLEKQAIKEDTPEKIVKLDKEAKYMNSNLKAKRSDLDMNQHVNHVKYARWMLETIPEQILESHQLSGIILEYRRECKSSDIVQSLCEPEEDEILHGVVEPDYYTSLLNGLSLASSDIINGGGGVLTCLEQRPIRYTHLLQLNGDNQRDEIVRGRTMWKRKFTTIPFST* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0332 398 Pfam Acyl-ACP thioesterase 91 324 IPR002864 GO:0006633|GO:0016790
Lja5g0332 398 CDD 4HBT 94 210 - -
Lja5g0332 398 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 10 391 - -
Lja5g0332 398 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 255 387 IPR029069 -
Lja5g0332 398 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 10 391 IPR045023 GO:0006633|GO:0016297
Lja5g0332 398 Gene3D Hotdog Thioesterase 85 394 - -
Lja5g0332 398 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 91 240 IPR029069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0332 Lja-Chr5 3000962 3004123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0332 78 398 Acyl Lipid Metabolism Gene Families AT1G08510 46.749 4.21e-96 291
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0332 5 3000962 3004123 Lja5g0332 5 3000962 3004123 ECH