Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0330 ATGCTCCCCACTCCGCAACCCACTTCCTTCCCAAACCTCTCTTCTCACCTCCCCTTTCTCCCCATGAAGGACCGCCCCTATGGCGCCGTTTACGTTCCGCCGCACCACCGCCTCCGCTCCGTCGTCACCTCCGCCAACCACCACTCCGCCGCCGCCGCTCCCGTTTCCCCTAAGCTCACACAAAACCCTACCCCCCTTAAAACCCCGTTTCTCGAGCAAGCTCCTAACAACACGAACTCGCGCTTCGTTTCTGCTTACGACGACGTCGTTTCCGATGATTGTTTCGATCGTGAATTTCAGATTCCACTCCCTTCATCACTACCGAGTGATTTCCCCAATGATAACATTGCTGAGTGGAAGAGGAAACTAAGCATGCTCTTAAATGACAAGAGTAAGCAGGAGGTGATTTCGCGGGAGAAAAAGGATAGGCATGATTTCGAGCAAATAGCGGTTTTGGCGACCGAAATGGGATTGTATAGCCATAAGTACACGAAGGTTGTTGTGTTCAGTAAGGTGCCACTTCCCAATTATAGATATGATTTGGACGATCGTCGTCCCTTGAGGGAGGTGAGCATGCCTATCACCTTGTTTAGGCAAGTTGATGCACATTTTGAGGAATATCTTAGACAGAAGTCCAGGGTGAACAAAAGCTTTTCAGATTTGTCACTTGCAAGATCAAGCAGTAATGGCAGTGTTGGTACAGACGAGGGGCTTTTTGAGCAACCTGTGCTGCTTGCATCCAGTAAGGCTGTTGCAGAGAAAGTTCTCTTGCGGAGAAGCTTACAGATGCGCAATCAGCAGCATGCTTGGCAGGAATCTCCTGAAGGAAGAAGAATTCTAGAATTTCGTAGCAGCCTCCCTGCTTATAAAGAGAAAGAAGCAATATTATCCATCTTATCAAGGAATCAGGTAGTTATCATTTCTGGTGAAACAGGTTGTGGCAAGACAACACAAATTCCACAATTTATTTTAGAATCTGAGATAGAAGCAGTTCGTGGAGCCGCTTGCAATATTATATGCACACAGCCAAGACGCATTTCTGCCATGTCTGTATCTGAGAGGGTTGCCTCGGAAAGAGGGGAGAAATTGGGTGAATCTGTTGGATATAAAGTTCGACTGGAGGGTGTGAAAGGGAGAGATACCCATATTCTCTTTTGCACCACAGGTATCTTACTAAGAAGATTACTAGCTGATAGAAACTTAGAGGGGGTAACTCATGTTATTGTGGATGAAATTCATGAACGTGGGATGAATGAAGATTTTCTGCTTATTGTCCTTAGAGATCTCCTTCTGCATCGACCTGAATTGAAACTAATTTTGATGAGTGCTACCCTAGATGCAGAGCTCTTCTCTTCGTACTTTAATGGGGCTCCAATTATGAATATTCCGGGCTTTACATACCCTGTTAGAACTTATTTTTTGGAGAACATTCTCGAAATGACGGGCTATAGATTGACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAACAGGCTCCAAGAAAGAGGAAAAGCCAAATTGCTTCCACTGTAGAGGATGCAATTAGAGCTGCTGATTTCAAAGATTACAGCCCACAGACACAGGAATCTTTGTCATGTTGGAATCCAGACTGTATAGGTTTTAGTCTCATTGAATATATCTTATGCAATATTTGTGAAAATGAAAGGCCTGGTGCTGTTTTGGTTTTCATGACTGGATGGGATGATATAAGCTCTCTGAAAGAGAAGCTCCTGAGAAATAATGTATTGGGAGATCCAAATCGTGTTTTGTTGCTTGCATGTCATGGCTCAATGGCTAGTTCTGAGCAGAGGTTAATATTCGAAGAGCCTGAAGATGGAGTTAGAAAAATAGTGCTCGCAACAAATATTGCTGAAACGAGTATCACAATCAATGATGTTGTTTTTGTTCTAGACTGCGGAAAGGCAAAAGAAACATCATATGATGCACTGAATAACACGCCTTGTTTGCTTCCTACATGGATCTCTAAGGTTTCTGCTCAACAAAGAAGAGGAAGAGCTGGTCGCGTTCAACCGGGAGAGTGTTACCATCTCTATCCTAGATGCGTATATGATGCTTTTGCAGAGTATCAATTGCCAGAAATTTTGAGAACACCACTGCAATCTCTCTGTTTACAAATCAAAAGTTTAAGACTTGGAAGTATATCTGAGTTCTTGTCTAGGGCTCTGCAGTCTCCTGAGATCCTTGCGGTACAAAATGCAGTTGAATATTTAGAAATAATTGGTGCTTTGGATGAGAGTGAGAATCTGACTATTCTAGGGCGCTATCTAGCTATGCTGCCTATGGAACCCAAACTTGGCAAGATGCTCATATTAGGTGCTATCTTCAGTTGCCTGGATCCCATATTAACTGTTGTTGCTGGTCTTAGTGTTAGAGATCCTTTCCTAGCACCGATGGATAAAAAAGATCTTGCAGATGCAGCAAAATCTCAATTTTCCGGTGCATACAGTGACCACCTAGCACTTCTAAGTGCTTATGAGGGTTGGAAAGATGCTGATATAGACCTGGGTGGATATGAATACTGCTGGAAAAACTTTCTTTCATTGCAATCAATGAAAGCTATTGATGCTCTTCGCAGGGAGTTTATATGCCTGCTCAAGGATATTGGACTAGTTGATAGCAACACAGCCAGCTACAATGCGTGGAGCTATGATGTGAATCTTATCCGGGCAGTTATTTGCTTTGGTCTATATCCTGGAATTTGTTCCATTGTGCATAATGAGAAATCATTCTCGTTGAAAACAATGGAGGATGGTCAAGTGCTCTTATACTCGAACTCGGTGAATGCTCGGGAAACTACAATTCCAAGTCCATGGCTAGTTTTTAATGAGAAGATAAAAGTGAACTCAGTTTTTCTCCGTGACTCAACAGCTGTGTCCGACTCAGTGGTGCTTCTCTTTGGGGGAAACTTGTCAAAAGGAGATGCCGATAATCACTTAAAAATGTTAGGAGGATATCTGGAGTTTTTCATGGAACCTGATGTTGCTGACATGTACCTGAGTATAAGGAGAGAACTTGATGACTTCATTCAGAGCAAACTACTTTTTCCCAGAATGGGTATGCACTTGTATCATGAGCTCCTATCAGCGGTACGGTTGTTGATTTCCAATGACGAGTGTGAAGGAAGATTTGTTTTTGGTCGCCCGGTTCTTAAAACATTAAAGAAATCTGTTATGGTCTCACGTCCAGCATTGTTTTCAAGGATTGAGAGCGGACCTGGGGGTGAAAATTCCAAAAGTCAGCTCCAAACCTTGCTTGCAAGAGCAGGATATGCTAAACCCTTCTACAAGACTGAACAGTTAATGAACAGCCAGTTTCAGGCTACTGTCGAGTTCAATGGAATGCAGATAATAGGCCTACCTTGTAATAATAAGAAGAGTGCAGAAAAAGCCGCCGCAGCTGAGGCGCTGCAGTGGCTGATAGGTGTAAAGCAAGCAGACACTGAGTATTTCAAACAGATGTCAATGTTGCTAAAGAAAAGTAAGAAGGATCACAATTAA 3540 0.4299 MLPTPQPTSFPNLSSHLPFLPMKDRPYGAVYVPPHHRLRSVVTSANHHSAAAAPVSPKLTQNPTPLKTPFLEQAPNNTNSRFVSAYDDVVSDDCFDREFQIPLPSSLPSDFPNDNIAEWKRKLSMLLNDKSKQEVISREKKDRHDFEQIAVLATEMGLYSHKYTKVVVFSKVPLPNYRYDLDDRRPLREVSMPITLFRQVDAHFEEYLRQKSRVNKSFSDLSLARSSSNGSVGTDEGLFEQPVLLASSKAVAEKVLLRRSLQMRNQQHAWQESPEGRRILEFRSSLPAYKEKEAILSILSRNQVVIISGETGCGKTTQIPQFILESEIEAVRGAACNIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGVKGRDTHILFCTTGILLRRLLADRNLEGVTHVIVDEIHERGMNEDFLLIVLRDLLLHRPELKLILMSATLDAELFSSYFNGAPIMNIPGFTYPVRTYFLENILEMTGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASTVEDAIRAADFKDYSPQTQESLSCWNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLRNNVLGDPNRVLLLACHGSMASSEQRLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAVEYLEIIGALDESENLTILGRYLAMLPMEPKLGKMLILGAIFSCLDPILTVVAGLSVRDPFLAPMDKKDLADAAKSQFSGAYSDHLALLSAYEGWKDADIDLGGYEYCWKNFLSLQSMKAIDALRREFICLLKDIGLVDSNTASYNAWSYDVNLIRAVICFGLYPGICSIVHNEKSFSLKTMEDGQVLLYSNSVNARETTIPSPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGNLSKGDADNHLKMLGGYLEFFMEPDVADMYLSIRRELDDFIQSKLLFPRMGMHLYHELLSAVRLLISNDECEGRFVFGRPVLKTLKKSVMVSRPALFSRIESGPGGENSKSQLQTLLARAGYAKPFYKTEQLMNSQFQATVEFNGMQIIGLPCNNKKSAEKAAAAEALQWLIGVKQADTEYFKQMSMLLKKSKKDHN* 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0330 1179 SMART ultradead3 283 472 IPR014001 -
Lja5g0330 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 844 IPR027417 -
Lja5g0330 1179 Pfam Double-stranded RNA binding motif 1091 1153 IPR014720 -
Lja5g0330 1179 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 463 IPR014001 -
Lja5g0330 1179 SMART ha2_5 746 836 IPR007502 GO:0004386
Lja5g0330 1179 CDD DEXHc_RHA-like 302 462 - -
Lja5g0330 1179 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 902 983 IPR011709 -
Lja5g0330 1179 Pfam DEAD/DEAH box helicase 292 446 IPR011545 GO:0003676|GO:0005524
Lja5g0330 1179 SUPERFAMILY dsRNA-binding domain-like 1085 1155 - -
Lja5g0330 1179 Gene3D - 549 703 IPR027417 -
Lja5g0330 1179 SMART DRBM_3 1091 1154 IPR014720 -
Lja5g0330 1179 Coils Coil 1175 1179 - -
Lja5g0330 1179 Gene3D - 726 830 - -
Lja5g0330 1179 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 70 1105 - -
Lja5g0330 1179 Gene3D - 1068 1158 - -
Lja5g0330 1179 SMART helicmild6 578 684 IPR001650 -
Lja5g0330 1179 Pfam Helicase associated domain (HA2) 747 820 IPR007502 GO:0004386
Lja5g0330 1179 Gene3D - 245 464 IPR027417 -
Lja5g0330 1179 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 550 724 IPR001650 -
Lja5g0330 1179 CDD SF2_C_RHA 530 692 - -
Lja5g0330 1179 Pfam Helicase conserved C-terminal domain 552 683 IPR001650 -
Lja5g0330 1179 PANTHER ATP-DEPENDENT RNA HELICASE 70 1105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0330 Lja-Chr5 2966789 2976864 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0330 5 2966789 2976864 Lja5g0330 5 2966789 2976864 ECH