Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0321 ATGGGCCCTCCTCCTCTTGATTCCGGCCATGCCCGTCTTCACGAACTCGGTTACAAACAAGAACTCAAGCGTGACCTCTCGGTCCTTGCAAATTTTGCATTTTCGTTCTCCATCATATCAGTGCTCACCGGAGTAACCACCCTTTACAACTCCGGCTTGACCTACGGTGGCCCTGCTTCATTGGTATATGGCTGGCTTATTGCCTCTGCTTTCACCATGCTTGTTGCCCTGTCAATGGCTGAGATTTGTTCATCTTATCCAACATCTGGTGGTCTTTACTATTGGAGTGCCAAGCTTGCTGGACCTGGATGGGCACCCTTTGCTTCCTGGATTACTGGCTGGTTCAATATTGTGGGGCAGTGGGCTGTGACAACAAGCGTGGATTTTTCACTTGCACAACTGATTCAGGTTATCATTCTCCTTAGTACTGGTGGGAAAAATGGTGGTGGATATGAAGCAAATAAATATGTAACTATTGCTTTCCATGCCGGACTTTTAGTCCTACATGGGATAATAAACAGCCTTCCAATTTCATGGTTATCATTCTTAGGGCAGTTGGCGGCTATCTGGAATGTTTTAGGTGTTTTTGTGCTTATGATTGCCATTCCATCGGTTGCAACGGAAAGGGCTAGTGCCAAGTTTGTTTTCACTCATTTCAATACTGATAACGGTGAAGGAATCAACAGCAAACCCTACATATTTCTCTTGGGGCTTCTAATGAGTCAATATACCCTAACCGGGTATGATGCATCAGCTCATATGACAGAGGAAACCAAAGATGCTGATAGAAATGGACCAAAAGGCATTATAAGCTCTGTTGGAATATCTATTATTGTTGGATGGGGGTACATACTAGGCATTACTTTCGCAGTCACTGACATCCCATACCTTTTGAATGAAAATAATGATGCTGGTGGATATGCCATAGCTGAAATATTTTATATGGCATTTAAGAGAAGATATGGCCATGGAATTGGGGGTATTATTTGCTTGGCAATTGTTGCTGTTGCCATCTTTTTCTGTGGTATGAGTTCAGTTACTAGCAATTCAAGGATGGTTTATGCTTTCTCAAGAGATGGGGCAATGCCACTGTCATCATTGTGGCATAAAGTTAACAAGCAAGAGGTCCCCATATATGCTGTTTGGCTTTCCGTTTTGATATCATTTTGCATGGCACTAACGTCTCTTGGAAGCATGGTGGCATTTCAAGCTATGGTCTCCATAGCAACGATTGGCCTTTACATTGCTTATGCCTTACCAATCTTCTTCAGGGTGACCTTGGCACAAAAACGTTTTGTCCCGGGACCTTTCAACTTGGGTCGTTATGGCGTCATTGTAGGCTGGATTGCGGTTCTTTGGGTGGTGACCATCTCCATCCTCTTCTCATTGCCTGTTTCCTACCCAATAACCATTGAGACACTTAACTATACCCCTGTTGCTGTTGGATGCTTGCTCATTCTTGTAGTTTCTTACTGGATAATCAGTGGTCGGCGTTGGTTTAAAGGCCCTGTAACCAATATACAAGTGAAGTTGTGA 1536 0.4375 MGPPPLDSGHARLHELGYKQELKRDLSVLANFAFSFSIISVLTGVTTLYNSGLTYGGPASLVYGWLIASAFTMLVALSMAEICSSYPTSGGLYYWSAKLAGPGWAPFASWITGWFNIVGQWAVTTSVDFSLAQLIQVIILLSTGGKNGGGYEANKYVTIAFHAGLLVLHGIINSLPISWLSFLGQLAAIWNVLGVFVLMIAIPSVATERASAKFVFTHFNTDNGEGINSKPYIFLLGLLMSQYTLTGYDASAHMTEETKDADRNGPKGIISSVGISIIVGWGYILGITFAVTDIPYLLNENNDAGGYAIAEIFYMAFKRRYGHGIGGIICLAIVAVAIFFCGMSSVTSNSRMVYAFSRDGAMPLSSLWHKVNKQEVPIYAVWLSVLISFCMALTSLGSMVAFQAMVSIATIGLYIAYALPIFFRVTLAQKRFVPGPFNLGRYGVIVGWIAVLWVVTISILFSLPVSYPITIETLNYTPVAVGCLLILVVSYWIISGRRWFKGPVTNIQVKL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0321 511 ProSitePatterns Amino acid permeases signature. 56 87 IPR004840 GO:0006865|GO:0016021|GO:0055085
Lja5g0321 511 PANTHER AMINO-ACID PERMEASE BAT1 HOMOLOG 5 508 - -
Lja5g0321 511 Pfam Amino acid permease 26 481 IPR002293 GO:0016020|GO:0022857|GO:0055085
Lja5g0321 511 Gene3D Amino acid/polyamine transporter I 20 501 - -
Lja5g0321 511 TIGRFAM 2A0304: amino acid permease 13 503 IPR004756 GO:0006865|GO:0016021
Lja5g0321 511 PIRSF AA_transporter 13 507 - -
Lja5g0321 511 PANTHER AMINO-ACID PERMEASE BAT1 5 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0321 Lja-Chr5 2834747 2839173 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0321 73 507 Organic Solute Cotransporters AT2G01170 77.011 0.0 660
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0321 5 2834747 2839173 Lja5g0321 5 2834747 2839173 ECH