Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0313 ATGGAGGCGCCGCCGCAACCTCCAACACCTTCCGCTGCTCCGCCGCTATCATCAGTTGCTCCGCCGCCTCAACCACCGCCTCATCTCAATTACGCTGACTCCGTGGACTCCTCCCCCCGCTCTCGCAACACCGACTCATGGGACGACCCCTTCCCTCCGACGTCAAAGCTCCGTCTCATGTGCAGCTACGGCGGCCACATCGTCCCCCGCCCTCACGACAAGTCTCTCTGCTACGTCGGCGGCGATACCCGAATCGTGGTGGTTGAACGCGCCACCTCACTCGCTGACATCTCCACGCGCCTCTCCAAAACGTTCCTCGACGGAAGACCCTTCACTCTGAAGTACCAGCTTCCGAACGAAGACCTCGATTCTCTCATCTCCGTCACCACCGACGAGGACCTCGAGAATATGATCGATGAGTACGATCGAACCACCACCACCACCGCGTCCTCCATCAAACCCTCGCGAATTCGCCTCTTTCTGTTTCCGACGAAGCCTGAGTCCGCTCACTCTATCCCGCCGCAAATCCTCGATTCGTCGGCGAAGTCCGATGACTGGTTCCTCGACGCGCTTAACGGCGCTGGATTGCTCAACCGTGGATTCTCCGATTCCGCTTCTGTTAACTGCCTTTTGGGACTCGACGACGTCGTCGCCGGAAACAACAACAACATCGAGCAAGGTGGTAGGGAAGGTGTGGAGGCTGGTGGTGGTGGTGCTTCGCTGCCTGGATCTTTTGCGAATTGCAAGAATTCGAAGCAGGATGTTTCGTCTGTGCCGGATTCGCCTATGCTGGAGACTTCATCGTCTTTTGGGTCTACTTCCTCGTCGCCGGCGCTGGCCAATTTGCCGCCGATTCGGACCCATGCTGAGGACGGTGGTGGTGGTGGGGTTAGGGTGCAGCAGCAGGATCAGAAGGTGCTGGGGATTGAGGAGCAGTTTGCTCAGTTGGGTGTTGCTGCTGGTGTTGGTGTTGGACAGAAGCAGGATGAGGGGTTTGTTGTGATCACTTCTCCTCCGCCGCCTCCTGTGCCGACGACTCTCTCCGCCCCGGCTATGGGTGTGCCGATCAATTCTGCGGTGGTTTCCGGTGATTACCAGAACCGGGTCTTCTCCGATGATGAGAGATCGGATCATGGGGTGCCTGTGGGATATAGAAAACCACCCACACCAACACCACAGCAACAGGCACAGCAACAATTACATACACAGACTCAGTCACAGTCACATCCTGCTCAATTTCAACAGAGGTCAAGTGGCGGCACTGATTTGCCTTCTCCTGATTCAGTTTCAAGTGATAGTAGTCTTGCGAATGCAATGTCGCGTCAAAAGCCTGTGATCTATCAAGAGCAAGTTCTGATTCAATCTGGAACTACAAGGGTTCCTACTCATAGTAACCCTGTGGATCCAAAACTTAATGTGTCTGATCCACAAAGTCGGATCCAGGTGCAGCAGCATCATGAGCAAGGATATTTGTTGCAACAGCAATTTGATCAGCAACAGCATTTGTTGCAACAGCAATTCGATCAGCAACAACACCAGCAGCAACAACACCAGCAACAACAACACCAGCAACAACAACACCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGTATATACATGGCACACAATTCATTCATCATAATCCTGCAAATGCAATTCCTGCATATTATCCTGTATATCCTTCCCAGCAACAGACTCATCCCCAGCATGCCCAAGTTTACTATGTACCTGCAAGACAAGCCCAAGCTTACAACTTGTCTATGCAGCAGGCTAATATGGGTGAATCTGGAAAACCGCAAACTCCTCCAAATCCTACTACATTGGTTCCTCAAACTGCAGCTTACAACAACCCCATGAGAAATGCTCCTTTACCTAAAACTGAAATGACAGCAGCAGGTTACAGAACTGCAACTGGAGGTAGCCCTCAATTAGTTCAGGTTCCCGCAAATCAGCTTCAGCATCAGCAGCAATATGTGACTTACTCCCAAATCCATCATCCATCTCAGTCCATAGCCCCAAATTCTGCTCCACCGGCTAATTATGCTTATGATTATGTGGATCCTGCTCATGCTCAAATATACTACTCTCAACCTCTGGCGCCCACAATGCCTTCACAGTATCAGACCATGACGGCTGCTGCTATGGTGCTGCCGGAAGGTTCTTCTGCTCAGCTTCCCTCTGATGGCATGAAGCAGCAGACAAGACCCTCATAG 2217 0.5237 MEAPPQPPTPSAAPPLSSVAPPPQPPPHLNYADSVDSSPRSRNTDSWDDPFPPTSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERATSLADISTRLSKTFLDGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTTTTTASSIKPSRIRLFLFPTKPESAHSIPPQILDSSAKSDDWFLDALNGAGLLNRGFSDSASVNCLLGLDDVVAGNNNNIEQGGREGVEAGGGGASLPGSFANCKNSKQDVSSVPDSPMLETSSSFGSTSSSPALANLPPIRTHAEDGGGGGVRVQQQDQKVLGIEEQFAQLGVAAGVGVGQKQDEGFVVITSPPPPPVPTTLSAPAMGVPINSAVVSGDYQNRVFSDDERSDHGVPVGYRKPPTPTPQQQAQQQLHTQTQSQSHPAQFQQRSSGGTDLPSPDSVSSDSSLANAMSRQKPVIYQEQVLIQSGTTRVPTHSNPVDPKLNVSDPQSRIQVQQHHEQGYLLQQQFDQQQHLLQQQFDQQQHQQQQHQQQQHQQQQHQQQQQQQQQQQYIHGTQFIHHNPANAIPAYYPVYPSQQQTHPQHAQVYYVPARQAQAYNLSMQQANMGESGKPQTPPNPTTLVPQTAAYNNPMRNAPLPKTEMTAAGYRTATGGSPQLVQVPANQLQHQQQYVTYSQIHHPSQSIAPNSAPPANYAYDYVDPAHAQIYYSQPLAPTMPSQYQTMTAAAMVLPEGSSAQLPSDGMKQQTRPS* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0313 738 Pfam PB1 domain 72 163 IPR000270 GO:0005515
Lja5g0313 738 Gene3D - 76 162 - -
Lja5g0313 738 MobiDBLite consensus disorder prediction 503 539 - -
Lja5g0313 738 SMART PB1_new 71 164 IPR000270 GO:0005515
Lja5g0313 738 MobiDBLite consensus disorder prediction 249 277 - -
Lja5g0313 738 MobiDBLite consensus disorder prediction 456 486 - -
Lja5g0313 738 MobiDBLite consensus disorder prediction 389 437 - -
Lja5g0313 738 Coils Coil 517 537 - -
Lja5g0313 738 PANTHER OS05G0427100 PROTEIN-RELATED 20 732 - -
Lja5g0313 738 PANTHER EXPRESSED PROTEIN 20 732 - -
Lja5g0313 738 MobiDBLite consensus disorder prediction 1 51 - -
Lja5g0313 738 MobiDBLite consensus disorder prediction 34 50 - -
Lja5g0313 738 CDD PB1_UP2 60 162 - -
Lja5g0313 738 MobiDBLite consensus disorder prediction 719 738 - -
Lja5g0313 738 PRINTS Atrophin signature 455 479 IPR017993 -
Lja5g0313 738 PRINTS Atrophin signature 1 23 IPR017993 -
Lja5g0313 738 PRINTS Atrophin signature 663 684 IPR017993 -
Lja5g0313 738 MobiDBLite consensus disorder prediction 370 437 - -
Lja5g0313 738 SUPERFAMILY CAD & PB1 domains 72 172 - -
Lja5g0313 738 ProSiteProfiles PB1 domain profile. 56 164 IPR000270 GO:0005515
Lja5g0313 738 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0313 Lja-Chr5 2744985 2747863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0313 54 237 MAP Kinase Kinase Kinase AT1G79570 32.620 2.08e-24 107
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0313 5 2744985 2747863 Lja5g0313 5 2744985 2747863 ECH
Lja5g0313 5 2744985 2747863 Lja2g2136 2 23990849 23993680 ECH
Lja5g0313 5 2744985 2747863 Lja2g1817 2 18774108 18776533 ECH