Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0312 ATGCACAGTGAAGTTGTTGAAGTGAAACGCGTGTTCATCGGAGCAGGATGCAACAGAATAGTCAACAACGTTTCCTGGGGTGCTTCTGGTTTAGTCTCTTTTGGAGCTCACAACGCCGTCGCCATCTTCTCCCCCAAGAGTGCTCAAATTTTGACTACTCTTCCTGGTCACAAAGCAGTTGTGAATTGCACTCACTGGCTCCCTACCAGCAAGTTTCTATTCAAGGCTAAAGGATTGGAGCAGCACTATTTGTTATCTGGAGATGCAGATGGTGCTATTATTCTGTGGGAACTGTCTCTTATTGATGGGAAGTGGAGACAAGTATCACAACTGCCACAATCACACAAGAAAGGTGTTACATGCATTAATGGACTTATGGTTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATGGCACTGTTTGTGTTTGGGAGCTGGTATTTCCGCTGACTAGCAGAGGTGACTGTAAACTTTCATGCCTGGATTCTTTCTCTGTTGGTTCTAAATCTATGGTAGCGCTATCATTGGCGGAATTGCCTGGAGGTGGTGGGCAAATCGTCCTTGCAATGGGAGGATTGGATAACAAGATTCACCTTTATTGTGGTGGAAGGACAGGAAAGCTTGTGCATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTATCAGCATCAATGGGGAAGTAAACAATATTTTTCTGGTGAGTTCATCACAAGATAAAGCCATAAGAATTTGGAAGATGGCATTAGTTAGTTCCGTATCCAATGGACATGGCATATACAAGAAGGAAGAAATGAGCTTATCATCCTATATAAAGGGTCCTGTACTTGTGGCTGGTTCATCCTCTTTTCAGATATCCTTAGAATCTCTTTTAATTGGACATGAGGACTGGGTATATTCGGTGCAGTGGCAACCCCCGGTGGAAATGGAAGGGAATGCCTATTATCAACCACAAAGCATTCTATCTGCATCTATGGACAAGACTATGATGATCTGGCAACCCGAAAAGACTTCTGGTGTCTGGATGAATGTAGTCACTGTTGGGGAACTAAGCCATTGTGCTTTGGGTTTCTATGGTGGTCATTGGAGCCCAAATGGAGATTCAATTTTAGCACACGGATATGGTGGATCTTTCCATCTTTGGAAAAATGTTGGTTATGATAACTGGCTGACGCAAAAGGTTCCCTCTGGTCATTTTGCATCTGTGACTGATATTGGATGGGCTAGATCTGGTGATTACATTATGTCAGTCAGTCATGACCAGACAACTAGAATTTTTGCTCCGTGGAAAGTTGAGGCTTCTCTCCAAGATGGAGAATTTTGGTATGAGATATCTCGCCCTCAGGTTCACGGTCATGATATAAACTGTCTGGCAGTTGTTCATAGTAAGGGAAATCATCGTTTTGTTGGTGGAGCTGATGAGAAAGTTGCCAGAGTGTTTGAAGCCCCATTATCATTTTTGAAAACATTAAATAATGCCACTTTGCAGAAGTCTTCTTCTGATGATGTTTTGAACGGCGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAGAAACCTATTTATGCTCAAGCTGTGAACGAGGCATCTGAAAGAAATGGGACTGATGGTATTGACACTCTTGAAACTATTCCGGAAGCAGTTCCAACTGTGTTCACTGAACCTCCAATTGAAGATCAACTGGCCTGGCATACACTCTGGCCTGAATCACACAAACTCTATGGTCATGGAAATGAACTATTTTCTCTATGCTGTGATCATAGGGGTGAGCTTGTTGCTTCTTCATGTAAGGCCCAATCTGCGGCTGTGGCAGAGGTATGGCTCTGGCAGGTTGGTTCATGGAAAACAGTTGGCCGCTTGCAATCCCACAGCTTAACGGTGACTCAAATGGAGTTCTCACATGATGACAGATTTCTCTTGACTGTCTCTAGAGATCGCCAGTTCTCCGTTTTTACAATCACAAGAACAGGTTCTGGTGAAGTTAGTTATAGTCTACTCGCGAGGCAGGAGGGGCACAAGCGGATTATCTGGTCATGTTCTTGGAACCCACATGGTCATGAATTCGCAACAGGATCACGGGATAAGACAGTGAAAATCTGGGGTGTAGAGAAGGAATCATCAGTTAAACAGCTTCTGACTTTACCTCAATTTACGAGTAGTGTGACAGCATTATCTTGGGCTGGTCTCCATGATCAGAAAAACGCTGGAATTCTAGCTGTGGGAATGGAAAATGGCCAAATAGAACTGTGGAGCCTGTCTTATAATAGAGCAGATGATGGCAGCATTACAACTCCAGGTTTGGCTGCTGCTCTTCTTGTACGTGTAGATCCTTTTATATGCCATGCCTCTACTGTGAACCGGTTGGCATGGAAGAAAAGTGAGGAAGATCACTTGAGCATGCAACTTGCTTCTTGTGGTGCTGATAATTGTGTAAGAGTGTTTGATATAAATGTTGTTGAGTAA 2502 0.4353 MHSEVVEVKRVFIGAGCNRIVNNVSWGASGLVSFGAHNAVAIFSPKSAQILTTLPGHKAVVNCTHWLPTSKFLFKAKGLEQHYLLSGDADGAIILWELSLIDGKWRQVSQLPQSHKKGVTCINGLMVSQTEAMFASTSSDGTVCVWELVFPLTSRGDCKLSCLDSFSVGSKSMVALSLAELPGGGGQIVLAMGGLDNKIHLYCGGRTGKLVHACELKGHTDWIRSLDFSLPISINGEVNNIFLVSSSQDKAIRIWKMALVSSVSNGHGIYKKEEMSLSSYIKGPVLVAGSSSFQISLESLLIGHEDWVYSVQWQPPVEMEGNAYYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGYDNWLTQKVPSGHFASVTDIGWARSGDYIMSVSHDQTTRIFAPWKVEASLQDGEFWYEISRPQVHGHDINCLAVVHSKGNHRFVGGADEKVARVFEAPLSFLKTLNNATLQKSSSDDVLNGVQILGANMSALGLSQKPIYAQAVNEASERNGTDGIDTLETIPEAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHRGELVASSCKAQSAAVAEVWLWQVGSWKTVGRLQSHSLTVTQMEFSHDDRFLLTVSRDRQFSVFTITRTGSGEVSYSLLARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWGVEKESSVKQLLTLPQFTSSVTALSWAGLHDQKNAGILAVGMENGQIELWSLSYNRADDGSITTPGLAAALLVRVDPFICHASTVNRLAWKKSEEDHLSMQLASCGADNCVRVFDINVVE* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0312 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 257 IPR001680 GO:0005515
Lja5g0312 833 PRINTS G protein beta WD-40 repeat signature 701 715 IPR020472 -
Lja5g0312 833 PRINTS G protein beta WD-40 repeat signature 84 98 IPR020472 -
Lja5g0312 833 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Lja5g0312 833 PANTHER ELONGATOR COMPLEX PROTEIN 2 3 831 - -
Lja5g0312 833 Gene3D - 285 400 IPR015943 GO:0005515
Lja5g0312 833 Gene3D - 5 158 IPR015943 GO:0005515
Lja5g0312 833 Gene3D - 401 531 IPR015943 GO:0005515
Lja5g0312 833 SMART WD40_4 47 97 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 579 623 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 104 147 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 720 764 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 397 437 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 784 828 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 447 491 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 353 392 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 207 256 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 626 665 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 294 343 IPR001680 GO:0005515
Lja5g0312 833 SMART WD40_4 675 714 IPR001680 GO:0005515
Lja5g0312 833 Gene3D - 159 268 IPR015943 GO:0005515
Lja5g0312 833 Pfam WD domain, G-beta repeat 113 146 IPR001680 GO:0005515
Lja5g0312 833 Pfam WD domain, G-beta repeat 301 342 IPR001680 GO:0005515
Lja5g0312 833 Pfam WD domain, G-beta repeat 683 713 IPR001680 GO:0005515
Lja5g0312 833 Pfam WD domain, G-beta repeat 215 256 IPR001680 GO:0005515
Lja5g0312 833 Pfam WD domain, G-beta repeat 49 96 IPR001680 GO:0005515
Lja5g0312 833 Pfam WD domain, G-beta repeat 402 436 IPR001680 GO:0005515
Lja5g0312 833 PANTHER WD REPEAT-CONTAINING 3 831 - -
Lja5g0312 833 Gene3D - 570 673 IPR015943 GO:0005515
Lja5g0312 833 Gene3D - 674 833 IPR015943 GO:0005515
Lja5g0312 833 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 682 716 - -
Lja5g0312 833 SUPERFAMILY WD40 repeat-like 82 491 IPR036322 GO:0005515
Lja5g0312 833 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 32 830 IPR011047 -
Lja5g0312 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 682 723 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0312 5 2736144 2741213 Lja5g0312 5 2736144 2741213 ECH