Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0309 ATGGATTCAAACACTTCAAGCTTTCTTTTGAACTCTTCAACTTTTCACTCAGTTTTCTACCAAGACAAACAAGATGATGGCATTATTGATCTGGGTCTTAGTCTTGGAACTGTTCAACATGAAGCTTATCATTCTTCTGGCAACTTGTATGATGATGACCTTATGGATTGGCCTCACTCTGATCTACATCTCAAGAATTCAAGCACAATGCATTCTAGATCTGTCCATGATGAAGAGTTAGAGGGAGTCCAGAGCAATGAGAGATGGGCTTATGTGAAGGTAAACATGGATGGAGTTACCATTGGTAGGAAAATTTGTGTCCTTGATCATGGAGGGTACTCAAGTCTAGCAATCCAATTAGAAGACATGTTTGGAAGCCAATCCCTTTCTGGGTTAGGATTGTTTCAATCTGAATCAGAGTATTCATTGTTCTACAAGGACAGAGAAGATAATTGGAGGCATGTTGGTGATGTCCCATGGAAAGAGTTTGTGGAATGTGTGAAACGCTTAAGGATTGCAAGAAAGAATGCAGGCTTTGTTTCCTGTTCATCATACACCTAA 561 0.3975 MDSNTSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSGNLYDDDLMDWPHSDLHLKNSSTMHSRSVHDEELEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMFGSQSLSGLGLFQSESEYSLFYKDREDNWRHVGDVPWKEFVECVKRLRIARKNAGFVSCSSYT* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0309 186 Gene3D - 83 183 - -
Lja5g0309 186 Pfam AUX/IAA family 56 175 IPR033389 -
Lja5g0309 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 177 - -
Lja5g0309 186 SUPERFAMILY CAD & PB1 domains 89 172 - -
Lja5g0309 186 ProSiteProfiles PB1 domain profile. 89 177 IPR000270 GO:0005515
Lja5g0309 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 177 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0309 Lja-Chr5 2711317 2712524 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0309 79 175 B3 DNA Binding Superfamily AT1G34310 30.928 3.25e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lja5g0309 AUX_IAA 4.2e-23 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0309 5 2711317 2712524 Lja5g0309 5 2711317 2712524 ECH