LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0308	ATGCTGCTAGTGCTACCTTTCATTTGCCTCCTTTTTCTCCTCTGCTGCAACTCTCTTGCACCTCTTGTGACTTCTCTCAATGCTGAAGGCTATGTCCTTTTAACATTCAAGCACTCCATCACTGACCCACAAGGCTCTATGAGTAACTGGAACTCTTCTGATGACAACCCATGTTCATGGAATGGGATTACATGCAAGGACCAAACAGTTATGTCAATTAGTATCCCAAATAGGAAACTCTATGGTTCTCTTCCTTCTACTCTAGGATCTCTTCCTCAGCTCCGACATGTCAACTTCAGGAACAACAAGCTCTTTGGAAACTTGCCTCTGCAGCTCTTTCAAGCTCAGGGACTACAAAGTCTAGTGCTTTATGGCAATTCCTTTTCTGGGTCTGTTCCAAATGAGATTCACAAGCTCAGGTACCTTCAAACTCTAGATTTGTCTCAAAATTTCCTTAATGGGTCATTGCCTGCTGAAATTGTGCAGTGTAAGAGACTCAAAACCCTTGTTCTCAGTAGAAACAATTTCACTGGGACTCTGCCAGATGGATTTGGTGCTAATTTGGTTTCTCTTGAAAAACTAGACCTTTCTTTCAATCAATTTAATGGTTCAATTCCTAGTGATATGGGAAATCTGTCAAGACTTCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCTAGCCTTGGCAATCTACCTGAGAAGGTTTACATTGATCTTACTTACAATAGTTTAACTGGTCCAGTGCCCCAAAGTGGTGCTTTGATGAATAGAGGACCAACTGCTTTTATTGGTAATCCTGGTCTATGTGGACCTCCTTTGAAGAATCCATGTGGTTCTGATACTGCTGCTGCTAGTTCACCTTCCTCATTTCCATTTCTTCCTCATGACAATCCACCTCAGGATGCTGGTAATGGTTCTAGGATAAGTGAGAAAAATAAAGGGCTAAGTAAGGGTGCTGTGGCTGGCATTGTTGTGGGTGATTTGATTGGAATTTGCCTTTTAGGTTTGCTGTTCTCCTACTTTTACTCAAGGGTTTGTGGTTGTAACCAGAATCAGGAAGAGAGTGGTGTTAAAAGGGAAAGGAAAAGAAGGAAAGAGTGCTTGTGCTTCACAATGGATGAATCTGAGGTGGCCCTATCTGATCATGTTGAGCAAGATGATCTTGTCCCATTAGATAACCAAGTGGACTTTGATTTGGATGAGCTTCTTAAGGCTTCAGCTTTTGTTTTGGGTAAGAGTGGAATAGGGATTATGTACAGGGTGGTGCTTGAAGATGGGGTTGCTTTGGCTGTGAGAAGATTAGGGGAAGGAGGTTCTCAAAGGTTCAAAGAGTTTCAAACAGAAGTAGAAGCTATAGGGAAGTTAAGGCATCCAAATATTGTAACTTTAAGAGCCTATTACTGGTCTGTTGATGAAAAGCTTCTCATATATGACTATATACCTAATGGAAGCCTTGCTACAGCAATTCATGGGAAGGCTGGACTTGTTGCATTTATCCCAATATCTTGGTCCTACCGATTGAAAATCATGAAAGGAACTGCAAAAGGGTTGGCCTATCTGCATGAATTCAGTCCTAAGAAGTATGTCCATGGAGATCTCAAGCCAAGTAACATACTTCTTGGACATAACATGACAGCCCACATTTCCGATTTTGGACTCGGGCGCCTTGCGGATATCGCTGGAGGTTCCCCAACCTTGCAATCCAACCGAGTCGCCGCAGAGAAGCTACACGAAAGACAAAACAGCTTGTCCACCGAAGTCGCAACTAACATGTTGGGAAACGGTTATCAGGCACCAGAAGCACTGAAAATGGTGAAGCCATCACAGAAGTGGGATGTTTATTCATACGGTGTGATTCTGTTAGAAATGATCACGGGACGATTACCAGTTGTCCAAGTGGGTATCTCAGAAATGGACCTTGTGCAGTGGATTCAGTTCTGCATTGAGGATAAGAAGCCACTCTCAGACGTATTAGACCCGTACTTGGCTGAAGAAGAAGCAGATAAGGAGGAAGAGGTAATTGCAGTTTTGAAGATTGCTATGGCTTGTGTCAATAGCAGCCCTGAAAAGAGACCTTCAATGAGGCACGTGCTTGATGCTCTTGATAGATTGTCCATTTCCTCTGATTGA	2148	0.4269	MLLVLPFICLLFLLCCNSLAPLVTSLNAEGYVLLTFKHSITDPQGSMSNWNSSDDNPCSWNGITCKDQTVMSISIPNRKLYGSLPSTLGSLPQLRHVNFRNNKLFGNLPLQLFQAQGLQSLVLYGNSFSGSVPNEIHKLRYLQTLDLSQNFLNGSLPAEIVQCKRLKTLVLSRNNFTGTLPDGFGANLVSLEKLDLSFNQFNGSIPSDMGNLSRLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTYNSLTGPVPQSGALMNRGPTAFIGNPGLCGPPLKNPCGSDTAAASSPSSFPFLPHDNPPQDAGNGSRISEKNKGLSKGAVAGIVVGDLIGICLLGLLFSYFYSRVCGCNQNQEESGVKRERKRRKECLCFTMDESEVALSDHVEQDDLVPLDNQVDFDLDELLKASAFVLGKSGIGIMYRVVLEDGVALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDYIPNGSLATAIHGKAGLVAFIPISWSYRLKIMKGTAKGLAYLHEFSPKKYVHGDLKPSNILLGHNMTAHISDFGLGRLADIAGGSPTLQSNRVAAEKLHERQNSLSTEVATNMLGNGYQAPEALKMVKPSQKWDVYSYGVILLEMITGRLPVVQVGISEMDLVQWIQFCIEDKKPLSDVLDPYLAEEEADKEEEVIAVLKIAMACVNSSPEKRPSMRHVLDALDRLSISSD*	716

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0308	715	SUPERFAMILY	Protein kinase-like (PK-like)	415	707	IPR011009	-
	Lja5g0308	715	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	534	546	IPR008271	GO:0004672\|GO:0006468
	Lja5g0308	715	Gene3D	Transferase(Phosphotransferase) domain 1	486	714	-	-
	Lja5g0308	715	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	6	714	-	-
	Lja5g0308	715	PANTHER	RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1	6	714	-	-
	Lja5g0308	715	CDD	STKc_IRAK	416	710	-	-
	Lja5g0308	715	Pfam	Leucine rich repeat	165	226	IPR001611	GO:0005515
	Lja5g0308	715	Pfam	Leucine rich repeat N-terminal domain	27	65	IPR013210	-
	Lja5g0308	715	MobiDBLite	consensus disorder prediction	285	316	-	-
	Lja5g0308	715	SUPERFAMILY	L domain-like	28	280	-	-
	Lja5g0308	715	ProSiteProfiles	Protein kinase domain profile.	410	710	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g0308	715	Gene3D	Phosphorylase Kinase; domain 1	379	485	-	-
	Lja5g0308	715	Gene3D	Ribonuclease Inhibitor	26	185	IPR032675	-
	Lja5g0308	715	Gene3D	Ribonuclease Inhibitor	186	284	IPR032675	-
	Lja5g0308	715	SMART	serkin_6	415	711	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g0308	715	Pfam	Protein kinase domain	416	705	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g0308	715	SMART	LRR_typ_2	139	163	IPR003591	-
	Lja5g0308	715	SMART	LRR_typ_2	188	212	IPR003591	-
	Lja5g0308	715	SMART	LRR_typ_2	91	115	IPR003591	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0308	Lja-Chr5	2708088	2710880	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g0308	4	715	Receptor kinase-like Gene Family	AT2G01210	65.512	0.0	966

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Lja5g0308		Pkinase	8.4e-33	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja5g0308	5	2708088	2710880	Lja5g0308	5	2708088	2710880	ECH