Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0298 ATGGTCCAAAACAGCTTCTCCTTTATCCTCTGTTCTCCCCTACTTCATGTACACATCATCATCTTCTACCTCCTAACCAGAACCACTCTGTGTTCTGTTGACCCAACGTTCGAAGCTTGTGAACCCAAAACCTGTGGAAACCAGAGCATATCCTACCCCTTCTACATCGAAGGAACACAACAACCCTTTTGTGGTTACCCTGGTTTTGGAATCTCTTGTAGCAGAAATGGTTTCCCAATCCTCAATTTGTCAAACACCCAATACATCATCAACCAAATATTCTATGAGAATCAGTCAATAAGAGTTTCCAATGCTGAGTTTTCAAGATCAAACACTTCAATCAGTTGTTTTTCTCATCCCCTGAAGAATCTCACTCTTCCTAGCGTGTTCCATCTTGTTCCGGAGCAAAAGGAGGTGGTGTTGTTCTTCGGCTGTGACGAGTTACCGTCGCTACCCAGAGAGCTAAGAGAGAGAGCAATCGGGTGTTCTGAAGGAAGCGTGAAGGGTTCGGTTCTGGCATTGTATGAGGGGGATAAGAATCTGAGCTCTGCGTCGCCGAGTTGCAAGGGTGAGATGGTGGTTGTGACGGTGGAAGACGGTGGTGGTGGGGAAGGAGGAGTTGAAGCGGCGCTGAGGAAAGGGTTGTTGTTGAATTGGATTGCTAGTGATTGCGGGGTGTGTAACAGCACTGGTGGGAGGTGTGGATTTGATTCTGAGATTTACACTTTTAGGTGCTACTGTGCTGATAGGGTTCATGCTAAACACTGTGTACCTGATCCAGTTCCAGAGCAAAAAGGACTGAGTCGGAATGCCAAATTGGCTATTGGTTTAAGTATCGGAATCCCAGGCATCGTGATAATTGGGTTGGTGCTGTTTCTCCTCCTACTCTGCAAACGAAAACATGTTACCTCTGGTGGACACTTCCAATCTAGTAATTCTTACTCTGATTCCTCCTCACATGCACGCCGAGAAAGTGGTAGTGCGTACTTTGGAGTTCCACTCTTCTCCTATGAGGAGCTTAAAAAGGCAACAAACAATTTTGACCATACAAAAGAACTTGGAGATGGAGGATTTGGTACTGTCTACTATGGGAAACTTCTAGATGGACGGGAAGTTGCTGTCAAGCGCTTATATGAGCACAACTTCAGGCGAGTAGAGCAGTTCATGAATGAAGTTCAGATCCTCACTAGTCTCCGTCACAAAAATCTTGTGTCCCTCTATGGCTGCACTTCACGGCACAGCCGTGAACTACTCCTTGTGTATGAATATATCTCAAATGGCACTGTTGCTTGTCATCTCCATGGTGGATTAGCCAAGCCTGGTTTACTACCATGGTGTACAAGACTCAAAATTGCCATAGAGACTGCTAATGCTTTGTCTTATCTCCATGCTTCCGGTATCATCCACCGTGACGTGAAAAGCAGCAACATTCTCCTTGACAACAATTATTCTGTCAAAGTTGCAGATTTTGGCCTTTCAAGACTGTTCCCGTATGATGTCACTCATGTCTCCACAGCGCCACAAGGGACTCCAGGTTACCTTGACCCTGAATATCATCAGTGCTACCAGCTTACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTTTTCTCATTGAGCTAATATCTTCTAAGCCTGCTGTTGATATAAGCAGGAGCAAGGATGAGATTAACTTGTCAAATCTAGCCATAAAGAAGATTCAAGAAAGTGAAATTGGTGATCTGGTAGATCCTTTTATTGGTTTTGACTCAGACAATGAGGTTAAGGGGATGATAGTTTCAATGGCACTCTTGGCATTTCAATGTTTGCAGATGGACAAGGAGTTAAGACCTTCCATGCAAGAAGTCTTGGATGAATTGAGGAGAATTGAGAGTGTGAAGGATGAGATTGAGCTTGTAGAGGAAGCAGATGTTCATGGTGTTGGAGTTGCACAGAGTAATGTACATCCACCACCACCAGCCTCACCTGAATGGGATGATATTGGCTTGTTGAAGCATGTGAAGCAGCCGAGTTCACCAAACACTGTTACTGATAAATGGGAAAGTAAATGTACTACTCCTAATATCAGTAGTAAATCACTTTAG 2082 0.4428 MVQNSFSFILCSPLLHVHIIIFYLLTRTTLCSVDPTFEACEPKTCGNQSISYPFYIEGTQQPFCGYPGFGISCSRNGFPILNLSNTQYIINQIFYENQSIRVSNAEFSRSNTSISCFSHPLKNLTLPSVFHLVPEQKEVVLFFGCDELPSLPRELRERAIGCSEGSVKGSVLALYEGDKNLSSASPSCKGEMVVVTVEDGGGGEGGVEAALRKGLLLNWIASDCGVCNSTGGRCGFDSEIYTFRCYCADRVHAKHCVPDPVPEQKGLSRNAKLAIGLSIGIPGIVIIGLVLFLLLLCKRKHVTSGGHFQSSNSYSDSSSHARRESGSAYFGVPLFSYEELKKATNNFDHTKELGDGGFGTVYYGKLLDGREVAVKRLYEHNFRRVEQFMNEVQILTSLRHKNLVSLYGCTSRHSRELLLVYEYISNGTVACHLHGGLAKPGLLPWCTRLKIAIETANALSYLHASGIIHRDVKSSNILLDNNYSVKVADFGLSRLFPYDVTHVSTAPQGTPGYLDPEYHQCYQLTSKSDVYSFGVFLIELISSKPAVDISRSKDEINLSNLAIKKIQESEIGDLVDPFIGFDSDNEVKGMIVSMALLAFQCLQMDKELRPSMQEVLDELRRIESVKDEIELVEEADVHGVGVAQSNVHPPPPASPEWDDIGLLKHVKQPSSPNTVTDKWESKCTTPNISSKSL* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0298 693 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 25 689 - -
Lja5g0298 693 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Lja5g0298 693 MobiDBLite consensus disorder prediction 667 693 - -
Lja5g0298 693 MobiDBLite consensus disorder prediction 666 693 - -
Lja5g0298 693 SMART serkin_6 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0298 693 Gene3D Phosphorylase Kinase; domain 1 318 423 - -
Lja5g0298 693 Pfam Protein kinase domain 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0298 693 Pfam Wall-associated receptor kinase C-terminal 178 249 IPR032872 -
Lja5g0298 693 ProSiteProfiles Protein kinase domain profile. 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0298 693 Gene3D Transferase(Phosphotransferase) domain 1 424 636 - -
Lja5g0298 693 SUPERFAMILY Protein kinase-like (PK-like) 325 619 IPR011009 -
Lja5g0298 693 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Lja5g0298 693 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 689 IPR044652 -
Lja5g0298 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0298 Lja-Chr5 2601188 2609332 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0298 39 690 Receptor kinase-like Gene Family AT1G25390 44.917 1.38e-165 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja5g0298 Pkinase 3.2e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0298 5 2601188 2609332 Lja5g0298 5 2601188 2609332 ECH