Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0296 ATGGCCTTCATTTTCATTTGGGAATTTTTATTAATTTTCTCCCAGTTTCTGCTTCTTGTTTCAGCTGAACATGAAGAAGAAGAAAAGTGTCCACCCTCTTTTGATTGTGGATATCTTGGCCAGATCAGCTTCCCTTTCACAACAGCACAATACCCACACTGTGGCACAGTGGCCATACATGGCTGTCATGATAAGAATCCATTCTCTAACAAAACCATCCAAGTAAACAACCATACACCATCAAGACAGTTTTTCGTTACAAACGTGGATCATACTACTATAACAGTCTCAGATTATGATCAACATGAGCGTTTGCATAACAAAGATTGCAGAACATTTGACAAAAATTTCACTCTTCCTCCTGCCTCTCCTTTAGCTTCTTATTATCTCAAATATAATATAACTATGTTCAGATGCAACCCTTCCCTTAGAGTACTAAACCTTCCAAAATTCTTTCATAACTATACAAAATGTTCTCATAGCAACATCTACTACGGCCTTCCAAATACTGAGAAACCTCGCGGCGGTTTCGAGTTGCCAACTACTTTGGCACGGTGTTCAGCTGTTCAGGTTGCAGTAAAAGGCCAGCCTGATGGTGATGACCCGTTTGAATTCTTATCTTCTGATATGGTCATTGAAGTAGAATTATTTCATGATTGTCACCAGTGTTTTTATCGCCAAAAGGGCCATTGTCAACTTGACACTGAAGGAAAATTTTATTGCGACAAAGAGACAAAAAGAAGTTTGGCAAGGAAGTTAGGACTTGGTATTGGACTTCCTGCCATTATCATAGCTGTGTTGCTGATTATATGGTGCTACAAATCAAGAAGTGTTCCTGATTTTAACTCAAATCCATACCCAGAGGGTAGCAGTGTCTACTTTGGGGTCCCAGTCTTCTCCTACACGGATCTTGAAGTAGCAACAAAAAAATTTGATCGTTCAAGAGAACTTGGAGAAGGAGGATTTGGGACTGTTTACTATGGAAAACTGAAAGATGGACGTGAAGTTGCAGTCAAGCGCCTTTATGAGCATAACTACAAGAGAGCACAACAGTTTGTGAATGAAATCAAGATCCTCACTCGCCTGCGCCACAAAAATCTAGTGTCTCTCTATGGCTGCACTTCATGTCATGGCCAAGAATTGTTGCTTGTATATGAGTACATTTCAAATGGGACAGTGGCCAGTCATCTCCGTTGTGAATCAACAAGTCCTGCCTTTTTGCCATGGTCTATAAGAATGAAAGTTGCCTTAGAGACTGCCACTGCATTGGCTTATCTCCATGCTTCTGACATCATTCACCGTGATGTCAAAACAAACAACATTCTCCTTGACAGCAATTTTTGTATTAAAGTTGCTGATTTTGGATTGTCAAGGTTGTTCCCTAATGATGTCACACATGTGTCCACAGCTCCACAAGGAACCCCTGGTTATCTCACAAACAAGAGTGATGTGTATAGCTTTGGTGTTGTGCTTGTTGAGCTGATATCATCACTGCCAGCAGTTGATATGACGCGGCATAAGGATGAGATAAACTTGGCAAATCTAGCCATTAGGAAGATTCAAAAAGGTGCAATTGGTGAGCTGGTGGATCCTTCTCTTGGTTTTGAGTCAGATGGTGATGTCAGGAGGAAAATAGTTTCGATAGCAGAACTGGCTTTTCAGTGCTTGCAACGAGACAAGGAATTGAGACCTTCCATGGGTGATGTATTGGAGGTGCTGAGAAGAATTGAAAGTGGGAAAACTGAGCCTGGACATTTGGAGGAAGTACTAGTTTATGGAGAAGGGATGTCACATAGTGATGTACATCCACTATCAGTACCTTCACCCGATCATGGTGAAGTGAATTTTTTTAAGAATATGAACTTAACACCTTCTCCAAACACTGTCACAGAAAATTGGGATAGTGAGCTTACTACTCCTAATGTCAGTGGCCAATCAGCAAGCCAAATCTAA 1953 0.4091 MAFIFIWEFLLIFSQFLLLVSAEHEEEEKCPPSFDCGYLGQISFPFTTAQYPHCGTVAIHGCHDKNPFSNKTIQVNNHTPSRQFFVTNVDHTTITVSDYDQHERLHNKDCRTFDKNFTLPPASPLASYYLKYNITMFRCNPSLRVLNLPKFFHNYTKCSHSNIYYGLPNTEKPRGGFELPTTLARCSAVQVAVKGQPDGDDPFEFLSSDMVIEVELFHDCHQCFYRQKGHCQLDTEGKFYCDKETKRSLARKLGLGIGLPAIIIAVLLIIWCYKSRSVPDFNSNPYPEGSSVYFGVPVFSYTDLEVATKKFDRSRELGEGGFGTVYYGKLKDGREVAVKRLYEHNYKRAQQFVNEIKILTRLRHKNLVSLYGCTSCHGQELLLVYEYISNGTVASHLRCESTSPAFLPWSIRMKVALETATALAYLHASDIIHRDVKTNNILLDSNFCIKVADFGLSRLFPNDVTHVSTAPQGTPGYLTNKSDVYSFGVVLVELISSLPAVDMTRHKDEINLANLAIRKIQKGAIGELVDPSLGFESDGDVRRKIVSIAELAFQCLQRDKELRPSMGDVLEVLRRIESGKTEPGHLEEVLVYGEGMSHSDVHPLSVPSPDHGEVNFFKNMNLTPSPNTVTENWDSELTTPNVSGQSASQI* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0296 650 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 5 650 - -
Lja5g0296 650 Pfam Protein kinase domain 312 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0296 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Lja5g0296 650 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Lja5g0296 650 SMART serkin_6 311 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0296 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 5 650 IPR044652 -
Lja5g0296 650 ProSiteProfiles Protein kinase domain profile. 311 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0296 650 Gene3D Transferase(Phosphotransferase) domain 1 388 583 - -
Lja5g0296 650 MobiDBLite consensus disorder prediction 627 650 - -
Lja5g0296 650 SUPERFAMILY Protein kinase-like (PK-like) 285 577 IPR011009 -
Lja5g0296 650 Gene3D Phosphorylase Kinase; domain 1 288 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0296 Lja-Chr5 2591411 2594261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0296 34 644 Receptor kinase-like Gene Family AT1G25390 43.994 1.20e-150 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja5g0296 Pkinase 2.4e-42 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0296 5 2591411 2594261 Lja5g0296 5 2591411 2594261 ECH