Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0294 ATGGCTTCCAGTGAAGGGAGGCGGCATCACCACCATGATCTTGTGCCTCTTGCTTCGTTGCTCAAGAGAGAGATGAAGAGTGAAAAGATGGAGAAGCCCACTCTGAGGTTTGGTCATGCTGCTCAGTCTAAGAAAGGGGAAGATTACTTTTTGATTAAGACTGATTGTCAAAGAGTGCCTGGGAACTCTTCATCATCCTTCTCCGTATTCGCGATCTTTGATGGACACAATGGAAATGCTGCTGCCATTTATACCAGGGAGCAATTGTTAAATCATGTTTTGGGTGCTCTTCCTCGAGGGCTTGGGCGAGATGAGTGGTTGCAAGCTTTACCTAGGGCGTTGGTTGCTGGTTTTGTTAAGACTGATAAGGAATTTCAGAGCAGAGGTGAAACTTCTGGAACCACAGCAACATTTGTGATAGTGGATAGATGGACTGTGACAGTTGCATCTGTTGGAGATTCCCGCTGTATACTAGACACTCAGGGTGGTGCTGTAACCACCTTAACTGTGGATCACAGACTAGAAGAGAATATTGAAGAGAGGGAACGTGTTACTGCAAGTGGAGGTGAAGTTGGGAGGCTTAGCATTGTTGGTGGTGCTGAGATTGGTCCCCTTCGATGCTGGCCAGGGGGTCTGTGCCTTTCTAGGTCAATAGGAGACATGGATGTTGGGGAATTTATAGTTCCAGTCCCATATGTCAAACAAGTGAAGCTATCAAATGCTGGTGGGAGGCTCGTAATTGCTTCTGATGGCATATGGGACGCTTTATCGTCAGAAATGGCTGCAAAATCTTGCCGTGGTTTGCCAGCAGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGATCAAGAGGGTTAAAGGATGATACAACATGCATAGTAGTTGACATAATCCCACCTGATAATGAATTGCCACCAACACCTTCCCCCAAAAAGCGGAACAAGCTGAGAGATTTTTTCTTCAGGAAAAGGTCCCGTGATTCTGCTAGTAAGCTGTCAAAGAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTCGAAGAAGGATCAGCAATGCTTGCTGAAAGATTAGGAAGTGATGAGAACTCAGGGCAATCAACAACATCTGGCCTTTTTGTCTGTGCTGTGTGCCAAGTTGATCTTGCTCCAAGCGAGGGCATCTCCGTCCATGCAGGTGGCATTTTTTCCACCAGCTCAAAGCCCTGGCAAGGTCCTTTTCTATGTTCTGATTGTCGCAATAAGAAGGATGCTATGGAAGGAAAACGTCCTAGTGGGGTTAAAGTGTCATAG 1293 0.4609 MASSEGRRHHHHDLVPLASLLKREMKSEKMEKPTLRFGHAAQSKKGEDYFLIKTDCQRVPGNSSSSFSVFAIFDGHNGNAAAIYTREQLLNHVLGALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTTLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSNAGGRLVIASDGIWDALSSEMAAKSCRGLPAELAAMQVVKEALRSRGLKDDTTCIVVDIIPPDNELPPTPSPKKRNKLRDFFFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGSDENSGQSTTSGLFVCAVCQVDLAPSEGISVHAGGIFSTSSKPWQGPFLCSDCRNKKDAMEGKRPSGVKVS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0294 430 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 5 429 - -
Lja5g0294 430 SMART PP2C_4 28 296 IPR001932 -
Lja5g0294 430 Pfam Protein phosphatase 2C 62 281 IPR001932 -
Lja5g0294 430 SUPERFAMILY PP2C-like 31 298 IPR036457 -
Lja5g0294 430 SMART PP2C_SIG_2 31 298 IPR001932 -
Lja5g0294 430 ProSiteProfiles PPM-type phosphatase domain profile. 29 298 IPR001932 -
Lja5g0294 430 Gene3D - 36 302 IPR036457 -
Lja5g0294 430 PANTHER ALPHABET, ISOFORM E-RELATED 5 429 - -
Lja5g0294 430 CDD PP2Cc 37 298 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0294 Lja-Chr5 2579773 2584609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0294 1 429 PP2C-type Phosphatase Gene Family AT1G68410 79.817 0.0 701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0294 5 2579773 2584609 Lja5g0294 5 2579773 2584609 ECH