Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0293 ATGACCAGAGTTTATGAATTTCTGTTTCTTTTGTTTGCTCACCTTATTATGCTTCTCTTGGTGGGTGTTGATGGGAATGAGTACCAAGGAGAGTGTCCACCTTCATTTAGCTGTGGATATCTTGGCAATATCAGTTTCCCCTTCACTAAAACAGAACGCCAGGACTGTGGCTTTTTGCCCATACCCAATTGTGATGATCCAATGATCCAATTACAGAATCAAGGAAAATTGTTTACTGTTTTAGGCGTTTCTCACTCTCAGACTAGTCCTACCGCAACAACTGTTCATCTTAGAGACAACCATCTCTACACACTTCTGGAGTCCAGGAATTGTGAAGCCTTCAGGGATAATTACACTCTTCCTCCCACCTCTCACTTTGCTTCTTTTCATATCCGTTACAATGTAACCATGTTCAGATGCAACCGCACACTCCATGTCAGCCTGCCAAAATACGTGCATAAATATACAAAGTGCCATGACTACGATCTCTTTTACAGTTACAACATCACTGCTGAAAATTCTTTGGCAGCATGTACGAAGGTTCAGCTTCCAATTAAAGACGTCCCTGACTCTGGAGACCCTTTTACATTCGTGACCGCTGATATCTTCACCGAAGTAAAATTAACAGAAGAGTGTGCAAATTGTCACTACCACCATAGAGGGCAGTGTCAACTTGACAGCAGAGACAGATTTTACTGTGCCAACAGTTCTGGTAAGCTGGCCTTGGTGGGCGTTGGAGTTGCAGTGTTGGCTGTCTTGGCTTGTTGCTTCAAGACAAAGATCATTCCTTCCCCATCTCTTTTGTTTTGGAAGGAGAATCCAACCAATCAGATTATTGAGAAGTTTTTTAAGGAACATGGTCCCCTTCCAACAGCTAGGTATAGTTATTCAGATGTCAAGAAAATAACTTACTCTTTCAGAAACAAATTAGGCCGAGGAGGGTTTGGATGTGTTTACAAAGGGAAGTTATGTGATGGAAGTGCTGTTGCTGTCAAGATTTTAAGTAAATTGAAAGGTGACGGACAAGAATTCATCAATGAAGTTGCAAGTATCAGCAGGACTTCACATGTCAACATTGTTAGACTTCTGGGATTCTGTTTAGAGGGTTCTGAAAAAGCTCTTATTTACGAATTTATGCCTAATGGATCTCTTGAGAAGTTCATTTATGAAGAGAGAAAATCATTCAAGAGCGATGACCAATTGGATTGCAAAACATTGTTTGATATTGCAATTGGTGTTGCGCGTGGATTGGAGTACTTGCATAGGGGTTGCAATAGCAGGATCTTGCATTTTGACATAAAACCTCACAACATTTTGCTAGATGAGAATTTCAGTCCAAAAATCTCAGATTTTGGACTTGCAAAGATCTGTTCAAGAGATGAAAGCATGGTATCGATATTTGGTGCTAGGGGAACTGCAGGGTACATTGCCCCAGAGGTGTTTTCCAGGAACTTTGGTGCAGTATCACATAAGTCAGATGTTTACAGCTATGGAATGATGGTCTTAGAAATTGTGGGCAGGAGGAAAAATATTACCGAAGTGGATCGTTCCAGTGAAATATATTTTCCTCATTGGATTTACAATCGTCTTGAATCAAACATGGAGCTTGGTCTGGTGAATATAAGAAGTGAAAATGATGATGAAATTGTGAGAAAGATGACAATAGTGGGCTTATGGTGCATACAAACCAATCCTTCAACTCGACCACCCATAAGCAAAGTAGTGGAGATGCTGGAAGGCAGAGTTGAGTTGTTGGAAATGCCACCCAAACCGTTTTTATCTTCTCCTCCAACCTCTCCAATCCAATTGGCATGTGATAGCTTGAGTTCTAAGATGTAG 1839 0.4089 MTRVYEFLFLLFAHLIMLLLVGVDGNEYQGECPPSFSCGYLGNISFPFTKTERQDCGFLPIPNCDDPMIQLQNQGKLFTVLGVSHSQTSPTATTVHLRDNHLYTLLESRNCEAFRDNYTLPPTSHFASFHIRYNVTMFRCNRTLHVSLPKYVHKYTKCHDYDLFYSYNITAENSLAACTKVQLPIKDVPDSGDPFTFVTADIFTEVKLTEECANCHYHHRGQCQLDSRDRFYCANSSGKLALVGVGVAVLAVLACCFKTKIIPSPSLLFWKENPTNQIIEKFFKEHGPLPTARYSYSDVKKITYSFRNKLGRGGFGCVYKGKLCDGSAVAVKILSKLKGDGQEFINEVASISRTSHVNIVRLLGFCLEGSEKALIYEFMPNGSLEKFIYEERKSFKSDDQLDCKTLFDIAIGVARGLEYLHRGCNSRILHFDIKPHNILLDENFSPKISDFGLAKICSRDESMVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVLEIVGRRKNITEVDRSSEIYFPHWIYNRLESNMELGLVNIRSENDDEIVRKMTIVGLWCIQTNPSTRPPISKVVEMLEGRVELLEMPPKPFLSSPPTSPIQLACDSLSSKM* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0293 612 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 605 IPR045874 GO:0004672
Lja5g0293 612 ProSiteProfiles Protein kinase domain profile. 304 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0293 612 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Lja5g0293 612 SMART serkin_6 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0293 612 SUPERFAMILY Protein kinase-like (PK-like) 291 579 IPR011009 -
Lja5g0293 612 Pfam Protein kinase domain 304 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0293 612 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Lja5g0293 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Lja5g0293 612 Gene3D Transferase(Phosphotransferase) domain 1 379 586 - -
Lja5g0293 612 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0293 Lja-Chr5 2577048 2579359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0293 5 602 Receptor kinase-like Gene Family AT1G66910 37.070 3.43e-126 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja5g0293 Pkinase 1.6e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0293 5 2577048 2579359 Lja5g0293 5 2577048 2579359 ECH