Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0292 ATGGTCCAAAACAGCTTCTCCTTTATCCTCTGTTCTCCCCTACTTCATGTACACATCATCATCTTCTACCTCCTAACCAGAACCACTCTGTGTTCTGTTGACCCAACGTTCGAAGCTTGTGAACCCAAAACCTGTGGAAACCAGAGCATATCCTACCCCTTCTACATCGAAGGAACACAACAACCCTTTTGTGGTTACCCTGGTTTTGGAATCTCTTGTAGCAGAAATGGTTTCCCAATCCTCAATTTGTCAAACACCCAATACATCATCAACCAAATATTCTATGAGAATCAGTCAATAAGAGTTTCCAATGCTGAGTTTTCAAGATCAAACACTTCAATCAGTTGTGTTTCTCATCCCCTGAAGAATCTCACTCTTCCCAGTTCCAGTGTGTTCGATCTTGTTCCGAACCAAAAGAACCTGATATTGTTCTTCGGCTGCAACGACTTGCCATCTCTACCCAGAGAGCTTCGAGAGCGCGAAATTGGGTGTTCTGAAAAAAGTGAAAAGGCTTCGGTTCTGGCATTGTATGAGGGGGATAAAAATCTGAGCTTTGCGTCGCGGAGTTGCAAGGGTGAGGCGGTGGTTGTGACGGTGGAAGACGGTGAAGGAGGAGTTGAAGCGGTGCTGAGGAAAGGGTTGCTGTTGAATTGGACCGCCAGTGATTGTGGGGTGTGTAAGAATAGTGGTGGGAGGTGTGGATTCGATTCAGAGATTTACACTTCGAGGTGCTATTGTGCTGATAGGGTTCATGCTAAACACTGTGTACCTGATCCAGTTCCAGATACAACTGGAAAAAAGACGCCCATAGTCACAATAGTGGCCTTAGCAGGTGCTGGAGTTGCAGTGTTGATTGTCTTGGCTTGCTGCTTTAGGATAAAGAACTTCTCTTCCGCATCGCTCTTCTTTTGGAAGCAGAATCCGACCAATCAGATTATTGAGAAGTTTTTTAAGGAACATGGATCTCTTCCCACAGCTAGGTATAGTTATTCAGATGTCAAGAAAATAACTAAATATTTTAGAAACAAATTAGGCCAAGGAGGGTTTGGATGTGTTTACGAAGGGAAGTTATGTGATGGAAATGCTGTTGCTGTCAAGATTTTAAGTAAATTGAAAGGTGACGGAGAAGAATTCATCAATGAAGTTGCAAGTATCGGCAGGACTTCACATGTCAACATTGTAAGACTTTTGGGATTCTGTTTGGAGGGTTCTAAAAGAGCTCTGATTTATGAATTTATGCCCAATGGATCTCTTGAAAAGTTTATTTATGAAGAGAAAAAATCATTCCAGAGTGATAACCAATTGGATTGCAAAACATTGTTTGATATTGCAATTGGAGTCGCTCGTGGATTAGAGTACTTGCATAGAGGTTGCAATAGCAGGATCTTGCATTTTGACATAAAACCTCACAACATATTGCTAGATGAGAATTTCAGTCCAAAAATCTCAGATTTTGGACTTGCAAAGATATGTTCAAGAGATGAAAGCATGGTATCGATACTTGGTGCTAGAGGAACTGCGGGGTACATTGCCCCGGAGGTGTTTTCTAGAAACTTTGGTGCAGTATCACACAAGTCAGATGTTTATAGCTACGGAATGATGGTCTTAGAAATTGTTGGCAGGCGAAAGAATATAAACACTGAAGTTGACCGTTCCAGCGAAATATATTTTCCTCATTGGATACACAGTCGTCTTGAATCAAACATGGAGCTTGGTCTGCGGAGTATAAGAAATGGAAATGATGATGAAATTGTGAGAAAGATGACAATAGTGGGCCTATGGTGCATACAAACCAATCCTTCAAATCGACCACGCATAAGCAAAGTAGTGGAAATGCTAGAAGGTAGAGTTGAGTTGTTGCAAATTCCACCCAAACCTTTTTTGTCTTCTCCTTCAACCTCTCCTGTCCATTTGTCATGTGAGACACACCATAGTTTGTCAGAATTCTAA 1950 0.4174 MVQNSFSFILCSPLLHVHIIIFYLLTRTTLCSVDPTFEACEPKTCGNQSISYPFYIEGTQQPFCGYPGFGISCSRNGFPILNLSNTQYIINQIFYENQSIRVSNAEFSRSNTSISCVSHPLKNLTLPSSSVFDLVPNQKNLILFFGCNDLPSLPRELREREIGCSEKSEKASVLALYEGDKNLSFASRSCKGEAVVVTVEDGEGGVEAVLRKGLLLNWTASDCGVCKNSGGRCGFDSEIYTSRCYCADRVHAKHCVPDPVPDTTGKKTPIVTIVALAGAGVAVLIVLACCFRIKNFSSASLFFWKQNPTNQIIEKFFKEHGSLPTARYSYSDVKKITKYFRNKLGQGGFGCVYEGKLCDGNAVAVKILSKLKGDGEEFINEVASIGRTSHVNIVRLLGFCLEGSKRALIYEFMPNGSLEKFIYEEKKSFQSDNQLDCKTLFDIAIGVARGLEYLHRGCNSRILHFDIKPHNILLDENFSPKISDFGLAKICSRDESMVSILGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVLEIVGRRKNINTEVDRSSEIYFPHWIHSRLESNMELGLRSIRNGNDDEIVRKMTIVGLWCIQTNPSNRPRISKVVEMLEGRVELLQIPPKPFLSSPSTSPVHLSCETHHSLSEF* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0292 649 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Lja5g0292 649 ProSiteProfiles Protein kinase domain profile. 338 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0292 649 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Lja5g0292 649 Gene3D Transferase(Phosphotransferase) domain 1 413 627 - -
Lja5g0292 649 Gene3D Phosphorylase Kinase; domain 1 314 412 - -
Lja5g0292 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Lja5g0292 649 Pfam Wall-associated receptor kinase C-terminal 178 248 IPR032872 -
Lja5g0292 649 PANTHER - 24 642 - -
Lja5g0292 649 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 642 IPR045874 GO:0004672
Lja5g0292 649 SUPERFAMILY Protein kinase-like (PK-like) 321 614 IPR011009 -
Lja5g0292 649 SMART serkin_6 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0292 649 Pfam Protein kinase domain 342 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0292 Lja-Chr5 2569985 2573398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0292 15 649 Receptor kinase-like Gene Family AT5G38260 40.152 1.35e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja5g0292 Pkinase 1.3e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0292 5 2569985 2573398 Lja5g0292 5 2569985 2573398 ECH