Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0290 ATGTCTGCAAAACCCTCTCACCTCATTGCTTCTGTTACTACACTTCTCCATTTCCTTCTCCTTGTTCAATGTTCCACCAACCCAGATTTCGAACCACTCATGGCTTTCAAAACCGCTTCAGACACAAACAAAACTCTCACATCTTGGAACACCACCACCAACCCATGCACATGGCACGGTGTCTCCTGCGTCGGAGACCGAGTCACGCGACTCGTTCTCGAAAATCTCCACCTCCAAGGCTCCATCGACCCGTTAACCGCTTTAACTCACCTCCGAGTCCTCAGCCTCAAAGGAAACCGCTTCTCCGGTCCACTTCCCACCACTCTCTCAAACTTAGCCTCTCTCAAGCTTCTCTTCCTGTCTCACAACGAATTCTCCGGCGAGTTCCCGGCGAGTCTGACGTCACTCTTCCGCTTGTACCGTCTCGATCTGTCTCACAACAACTTCTCCGGCGAGATTCCGGCGACGGTAAGCCGCTTGACCCACCTCCTCACTCTCCATCTCGACGAGAATCAATTCTCCGGCAACATTCCCAACATCAACCTCCCAGCGTTGCAGGACTTCAACGTCTCCGGTAACCGCCTCTCCGGCGAGATTCCAAACACCTTATCGGGTTTCCCCAAGTCCTCATTCGGGCTAAACCCGTCTCTCTGTGGAGCTCCGGTGGAGCAATGCGCGGTGGAACCGAGAAAACCCGGATCCCAAGGCACCATTGCTTCGCCGTTAGTCCCAAGCGGCGCCGTTCCGACCACCGTGTCATCTTCGCCGAGCGCAATGCCAAAGTCACCACCGTTAACTGGAAGCCATTCGAGGATAAGCCCGGTGGCTTTGATAGCGATTATAGTGGGTGACATTGTGGTTCTCTGCATAGTGTGTGTGCTTCTGTATTGCTATTTCTGGAGAAGCTACTCTGCTAAATCGAAAGAAGGAAAAGGGTCGAAGCTTTTTGAGAGTGAGAAGATTGTTTTCTCATCTAGTCCTTACCCTGCTCAAGCAGGATTTGAGAGGGGTCGAATGGTGTTCTTTGATGGGGAGAATCAGAAGAGGTTTGAGCTGGAGGATTTGCTGCGAGCTTCTGCGGAAATGCTGGGGAAAGGTGGGTTTGGAACGGCGTACAAAGCGGTGCTTGATGATGGTAATGTTGTTGCTGTCAAGAGGCTGAAAGATGCTCAGGTTGCAGGGAAGAGGGAGTTTGAGCAGAATATGGAGGTTCTGGGAAGGTTAAGGCACCCCAACATTGTTAGCTTGAGGGCTTACTATTTTGCAAGGGATGAGAAGCTTCTGGTCTATGATTACATGCCAAATGCTAGTTTGTTCTGGCTTCTTCATGGGAACCGAGGACCAGGAAGAACCCCATTGGACTGGACCACAAGGCTGAAGATAGCAGCCGGAGCGGCACGAGGCGTGGCCTTTATCCACAGTTCGTGCAAGTCCCTTGGGCTTACCCACGGTAACATCAAATCCACCAACATTCTCATTGACAAGCAGGGAAACCCACGGGTTTCTGATTTTGGGCTCTCCATCTTGACGGGCCCAGGCCCATCAGGCGGGAGATCCAACGGCTACCGTGCGCCGGAGGCATCGGACGGTAGGAAACAATCTCATAGGTCTGACGTGTACTCATTTGGGGTTCTCTTGCTGGAGTTGCTGACAGGGAAGTGTCCCTCCACCTCGGATGGTGGTGGTGGGGCGGTGGACCTGCCGAGGTGGGTCCAGTCAGTGGTGAGGGAGGAGTGGACGGCTGAGGTGTTTGATTTGGAGCTGATGAGGTATAAGGATATTGAGGAGGACATGGTGGGGCTGCTTCAGATTGCTATGGCTTGCACTGCGCCTGCACCTGATCAACGGCCTAGGATGAGCCACGTGGTCAAGATGATTGATGAGTTGCGTGGGGTCGAGGCGTCACCTTGTCATGACACGTGTGACTCCGTGTCTGAGTCACCCTCAATTTCTGAAGACACACCTGTGGTTGAACTCACTAGGCAGTAG 1989 0.5294 MSAKPSHLIASVTTLLHFLLLVQCSTNPDFEPLMAFKTASDTNKTLTSWNTTTNPCTWHGVSCVGDRVTRLVLENLHLQGSIDPLTALTHLRVLSLKGNRFSGPLPTTLSNLASLKLLFLSHNEFSGEFPASLTSLFRLYRLDLSHNNFSGEIPATVSRLTHLLTLHLDENQFSGNIPNINLPALQDFNVSGNRLSGEIPNTLSGFPKSSFGLNPSLCGAPVEQCAVEPRKPGSQGTIASPLVPSGAVPTTVSSSPSAMPKSPPLTGSHSRISPVALIAIIVGDIVVLCIVCVLLYCYFWRSYSAKSKEGKGSKLFESEKIVFSSSPYPAQAGFERGRMVFFDGENQKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQVAGKREFEQNMEVLGRLRHPNIVSLRAYYFARDEKLLVYDYMPNASLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHSSCKSLGLTHGNIKSTNILIDKQGNPRVSDFGLSILTGPGPSGGRSNGYRAPEASDGRKQSHRSDVYSFGVLLLELLTGKCPSTSDGGGGAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEDMVGLLQIAMACTAPAPDQRPRMSHVVKMIDELRGVEASPCHDTCDSVSESPSISEDTPVVELTRQ* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0290 662 Gene3D Ribonuclease Inhibitor 85 231 IPR032675 -
Lja5g0290 662 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 23 645 - -
Lja5g0290 662 Pfam Protein kinase domain 361 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0290 662 CDD STKc_IRAK 363 629 - -
Lja5g0290 662 Gene3D Transferase(Phosphotransferase) domain 1 433 645 - -
Lja5g0290 662 MobiDBLite consensus disorder prediction 637 662 - -
Lja5g0290 662 MobiDBLite consensus disorder prediction 238 265 - -
Lja5g0290 662 ProSitePatterns Protein kinases ATP-binding region signature. 363 395 IPR017441 GO:0005524
Lja5g0290 662 Gene3D Ribonuclease Inhibitor 22 84 IPR032675 -
Lja5g0290 662 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Lja5g0290 662 Gene3D Phosphorylase Kinase; domain 1 333 432 - -
Lja5g0290 662 ProSiteProfiles Protein kinase domain profile. 357 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0290 662 PANTHER - 23 645 - -
Lja5g0290 662 SUPERFAMILY L domain-like 46 208 - -
Lja5g0290 662 MobiDBLite consensus disorder prediction 510 535 - -
Lja5g0290 662 MobiDBLite consensus disorder prediction 640 662 - -
Lja5g0290 662 SUPERFAMILY Protein kinase-like (PK-like) 361 626 IPR011009 -
Lja5g0290 662 MobiDBLite consensus disorder prediction 229 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0290 Lja-Chr5 2560544 2563345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0290 29 654 Receptor kinase-like Gene Family AT1G68400 66.770 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja5g0290 Pkinase 3.6e-36 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0290 5 2560544 2563345 Lja5g0290 5 2560544 2563345 ECH