Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0287 ATGGGTTCCAAGATGGAAGGAACGTCTTCCCCTGTAATCCGACGTGACCCATATGAGGTTTTGTCTGTCTCAAGGGACTCAACAGATCAGGAAATCAAAACCGCTTACAGAAAGCTTGCTCTCAAGTATCATCCTGACAAGAATGTGAACAATCCTGAAGCTTCAGAGCTTTTTAAAGAGGTTGCATATTCTTATAGTATCTTGTCTGACCCAGAGAAGAGGAGGCAGTATGACAGTGCAGGATTTGAGGCACTTGATGCTGATGGCATGGACATGGAAATTGATTTATCGAATCTCGGGACTGTGAACACTATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACTACCATTTCAGCTAATGTTCTTGAAGAAGCTCTAAATGGCACAGTTACAGTCAGACCCCTTCCAATTGGGACATCCGTCAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATTAATGAGCAGCAAGCTGAGTCAGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACAAGATGCAAACGGTGGCTATGGTCTGGCATTGCAGGAAGATAGTGAAAAGACTGGCAAGGCGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTTTACAGAATGGATTCAACTGTGAATGCGTTAGCAATGGCCAAAGATCCTGAAGGGGCATTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCGGAACTCAAGCCTGGCACTCATATATTTGCTGTTTATGGGGATAACTTCTTTAAGACTGCTAGCTATACAATCGAGGCTGTGTGTGCGAAATCCTATGAAGATACCACACAAAAACTTCAGGACATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAATCAGAATATAGAAAGGCATTAGCACGGTATCAGGAAGTGACAGACAGATACACAAAAGAGAAACAGGCTGTAGATGAGCTTCTGAAACAAAGGGACGGTATCCATTCTTCCTTCACCATTGTCAAGCCAACCAATATCAGTGGAAGTGGTAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGAAGGAGGGTCAGATGGCAAGGATAAATCAGGCAAAAAGAAATGGTTTAACCTGAACCTCAAGAGTTCTGATAAAAGCAAGAAAGCAAGGACAACAATGAGGTAA 1257 0.4216 MGSKMEGTSSPVIRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNVNNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKATSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSYEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTKEKQAVDELLKQRDGIHSSFTIVKPTNISGSGSNLSNGSSSKISGEDSKGESPGEEGGSDGKDKSGKKKWFNLNLKSSDKSKKARTTMR* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0287 418 MobiDBLite consensus disorder prediction 356 376 - -
Lja5g0287 418 Coils Coil 412 418 - -
Lja5g0287 418 MobiDBLite consensus disorder prediction 356 418 - -
Lja5g0287 418 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Lja5g0287 418 Gene3D DnaJ domain 4 96 IPR036869 -
Lja5g0287 418 PRINTS DnaJ domain signature 73 92 IPR001623 -
Lja5g0287 418 PRINTS DnaJ domain signature 53 73 IPR001623 -
Lja5g0287 418 PRINTS DnaJ domain signature 36 51 IPR001623 -
Lja5g0287 418 PRINTS DnaJ domain signature 18 36 IPR001623 -
Lja5g0287 418 Pfam DnaJ domain 16 78 IPR001623 -
Lja5g0287 418 SMART dnaj_3 15 73 IPR001623 -
Lja5g0287 418 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 2 410 - -
Lja5g0287 418 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Lja5g0287 418 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 2 410 - -
Lja5g0287 418 CDD DnaJ 16 70 IPR001623 -
Lja5g0287 418 MobiDBLite consensus disorder prediction 377 418 - -
Lja5g0287 418 Coils Coil 286 341 - -
Lja5g0287 418 SUPERFAMILY Chaperone J-domain 15 91 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0287 Lja-Chr5 2534329 2539955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0287 7 88 C2H2 Transcription Factor Family AT1G74250 41.379 3.76e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0287 5 2534329 2539955 Lja5g0287 5 2534329 2539955 ECH