Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0286 ATGGATTACCAACATGACTACAAAACTAAAACAACAAACCCCACTTCCCCAACTCCCCTAAAGCTCTTTGGATTCAACGTCCATGAAGAAGAACAACAAGAGGCGGTGCATGAAGATTTTACTGACTCAACCACCAAGACAGCTTCCTCTACTTCCCCATCTGGCTCCCCGGACTCCGGCGGCGTCGACGGCGCCTTCCCACCTTCCTCCGGGGACCGGAAATTCGAGTGCCAGTACTGCGGCAGAGAGTTTGCAAATTCACAAGCACTTGGTGGGCATCAGAACGCGCACAAGAAAGAGCGGCAGCAACTCAAGCGTGCCCAGTTACAAGCCACGCGGAACGCCGCCGCATCATTCGCTCGAAACCCCATCATCTCCGCCTTCACCCCACCGCCGCACCTCCTGGCTCCGCCGGGGCCCGTCATGGTCCCTACGTGGGCATACATGCCGACACGTGGCGACGCCACTCCTCCCTTCCACGCGCCGGTTTCGCACGGTTGTGTGTTCCCGCCGGCGAACCGTAACGGTATGTGCGGCAGTTATAATCATCATCATCATCATAACAATGTAACGGTAACCGGTGTGAAATCCGCGGGTGCAGGGTTGTTTCCCTATGGTGGCGTTGTAGGGGATTCATCCTCTGCGTTTTCAACGATGCAGGTACAGGCCCGGGCCCATAATGGCAGGATTGACGGGCCTTCTATGAGTCAGTTCTCAAAAGTGGATGGCGGGCCCAAATTTGATGATGCATGGGGCCTGGACTTGCACCTTGGTCTTGCGCCAGCTGGGCCGTGA 795 0.5648 MDYQHDYKTKTTNPTSPTPLKLFGFNVHEEEQQEAVHEDFTDSTTKTASSTSPSGSPDSGGVDGAFPPSSGDRKFECQYCGREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAASFARNPIISAFTPPPHLLAPPGPVMVPTWAYMPTRGDATPPFHAPVSHGCVFPPANRNGMCGSYNHHHHHNNVTVTGVKSAGAGLFPYGGVVGDSSSAFSTMQVQARAHNGRIDGPSMSQFSKVDGGPKFDDAWGLDLHLGLAPAGP* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0286 264 MobiDBLite consensus disorder prediction 42 58 - -
Lja5g0286 264 MobiDBLite consensus disorder prediction 1 68 - -
Lja5g0286 264 MobiDBLite consensus disorder prediction 27 41 - -
Lja5g0286 264 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lja5g0286 264 Pfam C2H2-type zinc finger 75 100 - -
Lja5g0286 264 PANTHER ZINC FINGER PROTEIN 5 10 264 IPR044299 GO:0010090
Lja5g0286 264 PANTHER ZINC FINGER PROTEIN GIS3 10 264 - -
Lja5g0286 264 SUPERFAMILY beta-beta-alpha zinc fingers 71 102 IPR036236 -
Lja5g0286 264 Gene3D Classic Zinc Finger 66 123 - -
Lja5g0286 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0286 Lja-Chr5 2524591 2525768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0286 6 263 C2H2 Transcription Factor Family AT1G68360 43.403 2.29e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g0286 zf-C2H2_6 7.1e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0286 5 2524591 2525768 Lja5g0286 5 2524591 2525768 ECH