Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0277 ATGTCTACAATTCCAAAGAGAGAGTTGGGTTCTTCTAATGAAGAAAGTGGGCTGAGAAGAGGTCCTTGGACTCTTGAAGAAGACAGCTTACTCATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTGGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTCAGATGGTTGAATTACTTGAAACCTGACATCAAGAGAGGGAATCTTACTCCACAGGAGCAGCTGCTGATCCTTGAACTCCATTCCAAGTGGGGCAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAACGAGATTAAGAATTACTGGAGAACAAGGGTGCAGAAACAGGCACGCCAACTCAACATTGAGTCTGGTAGCAAGAGATTCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGGTTGCTCCAAAAGATGGAACAGAACCCCTCTCCCAGCATTCACCCTTCCATGACAAACATGAATTTTGGGAATTCTATAGAAGCTTCAACCAGTTCAATGTCAACTAGCTTCAATGTTCCTTCTATGTGTCCATCACCTCCTCCACAAAGGGAATTCATAGATGCTGCAAGCCATTTAAGCACTGTGTCCAGCCCCAGCAATAATCCTTCCTCAGATTCCTTCCAATATTCACAGCTGCAAGAAATTTCTCAACCTCCAATATGTGCTCCCAATGTGTTTGAGAGCAATGGTTACAGCTATCCAAACCAGGAGAGTAGCTATGTTGATAATAATAGCTATGGATTGGAAGGTTTAAACCTGGATCCCCTGCCTACAATGGAAAATTATGACATTTCACAGTTTGATTTTCAGACTGCGGGGAGTGGCTGGATGTTAGATAACATGGCTGAAGCTTTATGGAATATGGATGCTATGTGA 912 0.4342 MSTIPKRELGSSNEESGLRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNPSPSIHPSMTNMNFGNSIEASTSSMSTSFNVPSMCPSPPPQREFIDAASHLSTVSSPSNNPSSDSFQYSQLQEISQPPICAPNVFESNGYSYPNQESSYVDNNSYGLEGLNLDPLPTMENYDISQFDFQTAGSGWMLDNMAEALWNMDAM* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0277 303 SMART sant 19 69 IPR001005 -
Lja5g0277 303 SMART sant 72 120 IPR001005 -
Lja5g0277 303 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g0277 303 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 6 301 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja5g0277 303 CDD SANT 77 116 IPR001005 -
Lja5g0277 303 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Lja5g0277 303 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Lja5g0277 303 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Lja5g0277 303 CDD SANT 22 67 IPR001005 -
Lja5g0277 303 Gene3D - 76 118 - -
Lja5g0277 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Lja5g0277 303 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Lja5g0277 303 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Lja5g0277 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Lja5g0277 303 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 6 301 - -
Lja5g0277 303 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Lja5g0277 303 Gene3D - 17 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0277 Lja-Chr5 2437791 2439216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0277 18 157 MYB Transcription Factor Family AT1G68320 83.571 2.28e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g0277 Myb_DNA-binding 3.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0277 5 2437791 2439216 Lja5g0277 5 2437791 2439216 ECH