Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0271 ATGGACGGCCACCGCCGCAAAGACAAGGTGGTTGTCATCATGGGCGCCACCGGCTCCGGCAAATCCCGCCTCTCCATCGACCTCGCCACCCTCTTCCCCTTCTCAGAGATCATCAACTCCGATAAAATGCAAGTCTACAAAGGACTCGACACCACCACCAACAAGATCCCACCTCACCAACGCAACAACGTCCCCCACCACCTCCTCGGCGACGTCGACCCTTCTCTCGGTGATTTCACCCCCTCCGACTTCCGCCGCCGCGCCGGTGACCTCATCTCCGACATCACCCGCCGCAGAAAGCTCCCCATCCTCGTCGGCGGCTCCAACTCCTTCGTCCACGCCCTCCTTGTCGACCGATTCGACCCCGAGTCCAACGTCTTCCGCGACGATTCACCCTCGCCGGTTTCCTCCGAGTTGAGATACCGGTGCTGCTTCCTCTGGATGGACATTGCGTTCCCCGTGCTGTCGGAGTATTTGCTGAAGCGAGTCGACGACATGCTTGACTCGGGAATGGTGGACGAGTTGGCTCAGTTCTTCGACTCGGACACAGCGAACCAGACCGGGTTGAGAAAAGCCATCGGTGTACCCGAGTTCGACCGGTTTTTCAAGGATCCGGTGCGGGAGGGTGCAGCGTACGAGGAAGCGGTGAGGGCGATTAAGGAGAACACGTGTCAGCTAGCGAAGAGGCAGATTGGGAAGATCATGCGGTTAAAAAGAGCAGGGTGGGACCTACGGAGGATCGACGCCACGGAAGCGTTCCGGGTGGCGCTTGTGGCAGACGGCGGCGGAGAGAGATTTTCCGATGAATGGAAGAGGCAAGTGTTGGAACCAAGCGTGAAGATTGTGAAGCGGTTCTTGATGGAGTAG 867 0.5882 MDGHRRKDKVVVIMGATGSGKSRLSIDLATLFPFSEIINSDKMQVYKGLDTTTNKIPPHQRNNVPHHLLGDVDPSLGDFTPSDFRRRAGDLISDITRRRKLPILVGGSNSFVHALLVDRFDPESNVFRDDSPSPVSSELRYRCCFLWMDIAFPVLSEYLLKRVDDMLDSGMVDELAQFFDSDTANQTGLRKAIGVPEFDRFFKDPVREGAAYEEAVRAIKENTCQLAKRQIGKIMRLKRAGWDLRRIDATEAFRVALVADGGGERFSDEWKRQVLEPSVKIVKRFLME* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0271 288 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 152 244 - -
Lja5g0271 288 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 4 287 IPR039657 -
Lja5g0271 288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 122 IPR027417 -
Lja5g0271 288 Pfam IPP transferase 44 120 - -
Lja5g0271 288 Pfam IPP transferase 136 231 - -
Lja5g0271 288 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 4-RELATED 4 287 - -
Lja5g0271 288 Gene3D - 7 286 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0271 Lja-Chr5 2398828 2399694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0271 140 286 C2H2 Transcription Factor Family AT2G27760 28.889 1.85e-14 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0271 5 2398828 2399694 Lja5g0271 5 2398828 2399694 ECH