Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0268 ATGACTTTGTTGCTCCTTTACAGGAGACCAGAAGGAAACCCTTTAGATCTTAACAATTTGCCTGATGAGTATTCTAGAGATGGCAAACAAGTCCTAGAAGATAGCTCCTCACCCGGTAATACTCAACCCTTTTTCATTAATATGATCATCATGCCATGTCAATATACCAAAATATCAAAGCAAACATTCAAATGCAGCAGGAAAAAGAAAAGCGGCGGGAAGGAAGGAAAAGATAAAGAGGAGTGTGGGAAGGTCTATGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTCGGGGGACACATGAACCGTCACCGCCAAGGCATGCTAAGGGAAACAGAGACACTGAACCATGCTCGTCAACTGGTCTTCAGAAACGATCATAACCTTGCCCCACAAGTTGCCCCTCACCTAGGATGCTGCCAACCAATAGCACCAGTTGGGGGATATCATCCACCTACTGCAGGTAATAACATGGGAGGAGACCCAGCAATGCCTCTCAGATTCCCAAGATACTTCTCTGCTTCATCCTCAACAACCCACATACCACCACCACCACCACCATCTCAACCATATCTATATGCTTCACCTTCAAGACCACCGGTGACTTTTCCATCACACAATTTCCCTCAGCATCCAGTGAACCATGATTACCATTTGAGTCATGTGATGAGTAGCACCAACCACCAGCCATATGCAGGTCACCATAACAACATGAACTATGCAGGAGGTGAGTCCAGTTACACTTGCATAGGTGCACCGGTGGGACAAGGGTTCCCGGGAAATGGTGTTAAGGACATGTCACTGCAGAATCAGGAAGAAGGGTTGAATTGGGGAAGGAGCTATTCAGGAGCATCATCACAGCATCTGCAGCATCGTTTGGACCCTCCAACTTCAGCGATCAATCGGTTTCAAGATGGTTTTTAA 936 0.4647 MTLLLLYRRPEGNPLDLNNLPDEYSRDGKQVLEDSSSPGNTQPFFINMIIMPCQYTKISKQTFKCSRKKKSGGKEGKDKEECGKVYECRFCSLKFCKSQALGGHMNRHRQGMLRETETLNHARQLVFRNDHNLAPQVAPHLGCCQPIAPVGGYHPPTAGNNMGGDPAMPLRFPRYFSASSSTTHIPPPPPPSQPYLYASPSRPPVTFPSHNFPQHPVNHDYHLSHVMSSTNHQPYAGHHNNMNYAGGESSYTCIGAPVGQGFPGNGVKDMSLQNQEEGLNWGRSYSGASSQHLQHRLDPPTSAINRFQDGF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0268 311 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Lja5g0268 311 PANTHER ZINC FINGER PROTEIN JAGGED 9 282 IPR045320 GO:0003700
Lja5g0268 311 PANTHER ZINC FINGER PROTEIN JAGGED 9 282 IPR031113 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0268 Lja-Chr5 2369627 2371406 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0268 8 261 C2H2 Transcription Factor Family AT1G13400 39.163 4.44e-27 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0268 5 2369627 2371406 Lja5g0268 5 2369627 2371406 ECH