Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0260 ATGAGTTCTACAAAGAACGTGGCAAACGCGGTTGGTGGCAGAACCGCCAGAGCCTGTGACAGCTGCATAACCAAGAGAGCACGGTGGTACTGTGCTGCCGACGATGCTTTCCTATGTCAAGCTTGTGACTCCTCTGTTCACTCTGCAAATCCACTAGCTCGCAGGCATGAGAGGGTGCGGTTGAAAACAGCGTCGTACAAGTCTGGTGGTGGTGGTAGTGAGCCGTCGTGGCACGGTGGCTTCACTAAGAAAGCGAGAACGCCAAGGCAGGGGAAAGGTATGAAACAGAGGAACAACCCGTTTCATCTGGTGCCGGAGGTGGGGTTGGATGAGGTGAATTCCAATTCTCATGAAGAGAATGAGGAGCATGAGCAGCTTCTGTACAGGGTTCCGGTTTATGATCCTTTTGTGGGGGCTGAGCTATGCAGCACTCCGAATTCTTCTTTGAATTCAGCTGTGGTGGCAGTGGCAAATGCTTCTGATTCAGATTCTGGTCCTAAGGTTCAGGAGGATTATGAGTTGGAAAGCTTGCAGGGGATTCTTATTCCTTCTGATGTAGAGCTTGCTGAGTTTGCTGCTGATGTTGAGAGCTTGTTGGGGAGGGGGTTGGAAAATGAGTGCATGGGGATGGAAGAGTTGGGGCTGATTGATGCTAGCAAACAAGAGGAGTGGGAGTGTTCTGTGGGTAGTGAGAAGGTGAAGGTGGAAGAGGAAGAGGGACAACAAGTGGGTGGTGGGGAGATGGGAAGAGAATCAATATCTTTTGAGTTGAATTTTGATTATGATGATTCTCTTGAAACATGTGAGGATGAGGTGAAGGAGATTAATGGTGATGATGATATGGGAAAGGGTAGTTCAGAGTTGATTAAAGAAAATGGAAAAAGGAAGATTTTGCAGCTTGATTATGATGCAGTGATCATTGCCTGGTCTGGCCAAAAGTCTCCTTGGACAACTGGTGCTAAACCAGACTTGGATCTTGAAGAGTTCTGGCCTGAATGCATGGGAACTTGTGGAACAGAGGTTCAACATCCTTATGGTGGTGAATGGAGCAGTGGATTTGGGTGTCATCCTGCAGTAATGGCAGATGGTGGCAGAGAGGCAAGGGTGTTAAGATACAGAGAAAAGCGGCGAAGAAGGTTGTTCTCAAAAAAGATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGGATGAAAGGTAGGTTTGTGAAGAGGGCTTCCTTTGCAGCAGCACCAACCACATTTCCTTTGCTAAATAAATAA 1269 0.4752 MSSTKNVANAVGGRTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSGGGGSEPSWHGGFTKKARTPRQGKGMKQRNNPFHLVPEVGLDEVNSNSHEENEEHEQLLYRVPVYDPFVGAELCSTPNSSLNSAVVAVANASDSDSGPKVQEDYELESLQGILIPSDVELAEFAADVESLLGRGLENECMGMEELGLIDASKQEEWECSVGSEKVKVEEEEGQQVGGGEMGRESISFELNFDYDDSLETCEDEVKEINGDDDMGKGSSELIKENGKRKILQLDYDAVIIAWSGQKSPWTTGAKPDLDLEEFWPECMGTCGTEVQHPYGGEWSSGFGCHPAVMADGGREARVLRYREKRRRRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAAPTTFPLLNK* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0260 422 CDD Bbox1_BBX-like 18 61 - -
Lja5g0260 422 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 413 - -
Lja5g0260 422 Pfam CCT motif 365 407 IPR010402 GO:0005515
Lja5g0260 422 ProSiteProfiles CCT domain profile. 365 407 IPR010402 GO:0005515
Lja5g0260 422 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lja5g0260 422 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 413 - -
Lja5g0260 422 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lja5g0260 422 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Lja5g0260 422 MobiDBLite consensus disorder prediction 64 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0260 Lja-Chr5 2296647 2298458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0260 5 407 C2C2-CO-like Transcription Factor Family AT1G25440 47.430 1.52e-108 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja5g0260 zf-B_box 7.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0260 5 2296647 2298458 Lja5g0260 5 2296647 2298458 ECH