Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0259 ATGCCTCCTATTTTGCCGGATTTCTCCACCTCGGTTAAGCTCAAGTATGTCAAACTTGGTTACCAATACCTAGTCAACCACATTCTCACCCTCACCCTTGTACCAATCATGGTTGGTGTCTTGATAGAATTGCTCCGTTTAGGCCCTGAAGAAATCTTCAAAATTTTCGAGTCTCTTCACTTTAACCTTGTTCAAATTCTCTGCTCTGTTTTTCTTATCATCTTCATAGGAACTGTGTACTTCATGTCCAAGCCACGCACAATTTACCTTGTTGACTATGATTGTTTCAAACCACCTGTTACTTGCCGTGTCCCCTTTGCAACCTTCATGGAACATTCTCGCCTCATCTTGAAGAACAATCCAAAAAGTGTGGAGTTTCAAATGAGGATTCTTGAACGCTCTGGCTTGGGTGAAGAAACTTGTTTGCCACCTGCAATTCATTACATCCCTCCCAAACCCACCATGGAAGCTGCCAGAGGAGAAGCAGAGCTTGTGATTTTCTCAGCCATGGATTCTCTGTTCAAGAAAACAGGGCTTAAGCCAAAGGATATTGACATTCTGATTGTGAATTGCAGTTTATTCTCTCCAACACCTTCACTCTCTGCCATGGTGATCAACAAGTATAAATTGAGGAGTAACATCAAGAGCTTTAACCTCTCTGGAATGGGTTGCAGTGCAGGGTTGATTTCAATTGATTTAGCTCGTGATCTTCTCCAAGTTCATCCCAATTCAAATGCTGTGGTTGTGAGCACTGAAATCATCACACCAAACTATTACCAAGGAAATGAAAGAGCTATGCTTCTTCCTAATTGCTTGTTCAGAATGGGTGGTGCTGCGATTATGTTATCGAATCGAAGCTCTGAATCAAGCAGAGCTAAGTACAAATTGGTCCATGTTGTTCGAACACACAAAGGTTCAGACGACAAAGCTTATCGCTGCGTGTTTGAAGAGGAAGACAAAGAAGGGAAGGTTGGAATTTCACTTCAAAAAGATCTCATGGCAATTGCAGGAGAAGCTTTGAAATCAAACATCACTACAATGGGTCCTCTTGTTCTTCCAGCTTCAGAGCAGGTTCTATTTCTTGCAACTCTCATTGGAAGGAAAATTTTCAACCCCAAATGGAAGCCTTACATTCCTGATTTCAAGCAAGCTTTTGAGCATTTCTGCATTCATGCCGGTGGACGCGCCGTGATTGATGAGCTGCAGAGGAACCTTCAGCTCTCGGCGGAGCACGTTGAGGCGTCGAGGATGACGCTGCACCGGTTCGGGAACACCTCGTCTTCGTCGCTGTGGTATGAGCTGAACTACATTGAATCCAAGGGGAGGATGAAGAGAGGGGATAGAGTTTGGCAGATTGCGTTTGGGAGTGGATTTAAATGCAACAGTGCTGTGTGGAAGTGCAATAGAACCATCAAGACTCCTTTTGATGGCCCTTGGTCGGATTGCATTGATCGCTATCCGGTTCATATTCCGGAGATCGTTAAGCTCTAA 1491 0.4406 MPPILPDFSTSVKLKYVKLGYQYLVNHILTLTLVPIMVGVLIELLRLGPEEIFKIFESLHFNLVQILCSVFLIIFIGTVYFMSKPRTIYLVDYDCFKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPKPTMEAARGEAELVIFSAMDSLFKKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIMLSNRSSESSRAKYKLVHVVRTHKGSDDKAYRCVFEEEDKEGKVGISLQKDLMAIAGEALKSNITTMGPLVLPASEQVLFLATLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQRNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRVWQIAFGSGFKCNSAVWKCNRTIKTPFDGPWSDCIDRYPVHIPEIVKL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0259 496 PANTHER 3-KETOACYL-COA SYNTHASE 4 495 - -
Lja5g0259 496 SUPERFAMILY Thiolase-like 297 467 IPR016039 GO:0016746
Lja5g0259 496 PIRSF Very_long_ch_3-ktacl-CoA_syn 7 496 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja5g0259 496 Pfam FAE1/Type III polyketide synthase-like protein 80 368 IPR013601 GO:0006633|GO:0016020|GO:0016747
Lja5g0259 496 PANTHER 3-KETOACYL-COA SYNTHASE 4 495 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja5g0259 496 CDD CHS_like 73 465 - -
Lja5g0259 496 SUPERFAMILY Thiolase-like 74 290 IPR016039 GO:0016746
Lja5g0259 496 Gene3D - 113 466 IPR016039 GO:0016746
Lja5g0259 496 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 384 466 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0259 Lja-Chr5 2288278 2290375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0259 5 496 Miscellaneous Gene Families AT1G25450 83.130 0.0 889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0259 5 2288278 2290375 Lja5g0259 5 2288278 2290375 ECH