Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0258 ATGTCCAAGTCTCGAAAGCAACCTGCAAGTAGAAGGCTAAGGCCTCAACCCTTGCCTGAGTTCAAGATGGTTAGGAAATTGCGGGTGATTTATGATGATCCTTATGCAACTGAATCATCTGATGATGAGTACTATCATTCAAGGGAGAAGAAGCCCAGGAAAATCAAAAGATGCATCACTGAGATTCCTCTTCCTCCTCTTGTTCCTGTCATTCCTGAACCTAGCTCCTTTGCTGAGAAGAAAATCAACAATGCTGTTGAGGTTCACAACAAGAAGAGGGTTTCAACCCAGAACCCTTCAACAAGGAGGCAACCCTCTTGCAAGTACAGAGGTGTTAGACAGAGGAAGTGGGGAAAATGGGCTGCGGAGATTCGTGACCCGTTCAAAGGTGCCCGTCTCTGGTTAGGCACTTACAACACTGCTGAAGAGGCTTCTCAAGCCTATGAGAACAAGAGGCTCGAGTTTGAAGCCATGGCGAAGGCTCTTGTACCCAAGAATGGGTCTTCTGATAAGGGTTCTGCTTCAAACTCTTGCTCTGCTGTTGCCGCTGCTGTTGCTCCTGCTGCTGAAGGTTCTGCATCAGAGAAATCATCTTCTGGTGCTGATGTTTCTGATGACTCTGATAGCATGTTCTCACACCCATCACCTTCCTCTGTGCTTGATGTGGATGCCTCAGCTAACAATTTGATTGAGAATGGTGATAGCTCTAGTATTGAAGCTCTTGATGCTGAGGCTTATGACATGGTTGCTGAATTGGCTGGTCTAGAAATACCAGACTTGAGTCTTCTGACATTGCCTCCATCACCACCACCAACTGTTGCTGATGTTGTTGTTCCAACTGGCTCTGAGCCAAACCCTGTGCTTGATTTTGATTTCATATTTGATTGTCCAGGACAGGGCTTTGATGATGATACCAACCTTGGTGGTGGCCTTGAGGATATCCCATTTTTTGGGTTTGACGATAATGTGCCTAGCCAGCTTCCTGATTTCGATTTTGGTGATTTTGGTTCTGATGAGTTTGCTGGTTGTTTTGAAGAACCCTTCCATATACCCTGCGCCTAA 1062 0.4605 MSKSRKQPASRRLRPQPLPEFKMVRKLRVIYDDPYATESSDDEYYHSREKKPRKIKRCITEIPLPPLVPVIPEPSSFAEKKINNAVEVHNKKRVSTQNPSTRRQPSCKYRGVRQRKWGKWAAEIRDPFKGARLWLGTYNTAEEASQAYENKRLEFEAMAKALVPKNGSSDKGSASNSCSAVAAAVAPAAEGSASEKSSSGADVSDDSDSMFSHPSPSSVLDVDASANNLIENGDSSSIEALDAEAYDMVAELAGLEIPDLSLLTLPPSPPPTVADVVVPTGSEPNPVLDFDFIFDCPGQGFDDDTNLGGGLEDIPFFGFDDNVPSQLPDFDFGDFGSDEFAGCFEEPFHIPCA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0258 353 SUPERFAMILY DNA-binding domain 108 155 IPR016177 GO:0003677
Lja5g0258 353 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 352 - -
Lja5g0258 353 Pfam AP2 domain 107 157 IPR001471 GO:0003700|GO:0006355
Lja5g0258 353 Gene3D AP2/ERF domain 107 162 IPR036955 GO:0003700|GO:0006355
Lja5g0258 353 MobiDBLite consensus disorder prediction 188 218 - -
Lja5g0258 353 SMART rav1_2 108 162 IPR001471 GO:0003700|GO:0006355
Lja5g0258 353 ProSiteProfiles AP2/ERF domain profile. 108 168 IPR001471 GO:0003700|GO:0006355
Lja5g0258 353 MobiDBLite consensus disorder prediction 192 218 - -
Lja5g0258 353 CDD AP2 107 148 IPR001471 GO:0003700|GO:0006355
Lja5g0258 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 21 352 - -
Lja5g0258 353 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Lja5g0258 353 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0258 Lja-Chr5 2264325 2265386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0258 1 352 AP2-EREBP Transcription Factor Family AT1G68550 31.944 5.92e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja5g0258 AP2 3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0258 5 2264325 2265386 Lja5g0258 5 2264325 2265386 ECH