Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0253 ATGAAGGTTTTCGTCAAGACTCTGAAGGGCTCTCACTTCGAAATCGAAGTCAAGCCCCAAGACACGGTTTCGGATGTGAAGAAAAATATTGAAACTGTTCAAGGTGTGGATGTCTATCCTGCCGCGCAGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAGGATGGTACTACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTGATTATGATTTCCAAGAGTAAGACTCCGTCTGGTGAAGGATCTACTACTTCAGCTGCACCTTCAGCTAAGGCTCCACAAACAAGTGCAGCTCCTACTTCAAACCCTGTGGTGTCAGTGCCACTTCCAACTCCTACTGCAACTGGGGCTCCGCTTGCACCTGTTACTGCAGCTGCACCTGCGGCTCCAGCTGCGACTCCTGCTCCATCTCCAGCTCCTGCTCCTATATCTTCGGGCACGGCTGTGGAAGGTTCTGATGTCTATGGACAAGCAGCATCCAATCTGGTTGCTGGTAGCAACTTGGAAGACACAATTCAGCAAATTCTTGATGTTGGAGGAGGGACCTGGGATAGGGATACTGTAGTCCGGGCTCTTCGAGCTGCCTTCAACAACCCTGAGAGAGCTATTGAATATTTATATTCAGGAATCCCCGAGCAAGCTGAAGCTCCACCTGTGGGCCGTGTGCCTGCAAGTGCACAACCTGCAAATCCTCCAGCAGCTGCAGCTCCGCAAGCGGCACAACCTGCTCCTGTTACCTCAAGTGGGCCTAATGCTAATCCTTTAGACCTTTTTCCACAGGGCCTCCCAAATGTTGGTTCTGGTGGTGCTGGTGCTGGTGCTGGCTCTTTAGATTTTCTTCGCAACAGCCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAGAATCCTCATCTAATGAGATTGATTCGAGATCATCAAGCTGACTTCCTTCGCTTGATAAATGAGCCTGTGGAAGGTGGCGAAGGGAACCCATTGGGGCAGCTGGCTGGTGGCATACCACAAGCAATAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTCGATCGTGCGATTGTATTGGAGGTGTTCTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTCGACGAACAATAA 1221 0.4889 MKVFVKTLKGSHFEIEVKPQDTVSDVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMISKSKTPSGEGSTTSAAPSAKAPQTSAAPTSNPVVSVPLPTPTATGAPLAPVTAAAPAAPAATPAPSPAPAPISSGTAVEGSDVYGQAASNLVAGSNLEDTIQQILDVGGGTWDRDTVVRALRAAFNNPERAIEYLYSGIPEQAEAPPVGRVPASAQPANPPAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNVGSGGAGAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNPLGQLAGGIPQAITVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFDEQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0253 406 SMART ubq_7 1 75 IPR000626 GO:0005515
Lja5g0253 406 MobiDBLite consensus disorder prediction 78 115 - -
Lja5g0253 406 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 405 - -
Lja5g0253 406 MobiDBLite consensus disorder prediction 220 260 - -
Lja5g0253 406 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Lja5g0253 406 Gene3D - 1 80 - -
Lja5g0253 406 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 405 - -
Lja5g0253 406 PRINTS DNA repair protein Rad23 signature 306 328 IPR004806 GO:0006289
Lja5g0253 406 PRINTS DNA repair protein Rad23 signature 387 402 IPR004806 GO:0006289
Lja5g0253 406 PRINTS DNA repair protein Rad23 signature 372 386 IPR004806 GO:0006289
Lja5g0253 406 PRINTS DNA repair protein Rad23 signature 355 371 IPR004806 GO:0006289
Lja5g0253 406 CDD UBA1_Rad23_plant 165 214 - -
Lja5g0253 406 Gene3D - 164 214 - -
Lja5g0253 406 SUPERFAMILY UBA-like 341 404 IPR009060 GO:0005515
Lja5g0253 406 SUPERFAMILY UBA-like 168 224 IPR009060 GO:0005515
Lja5g0253 406 Pfam XPC-binding domain 280 335 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lja5g0253 406 TIGRFAM rad23: UV excision repair protein Rad23 1 404 IPR004806 GO:0006289
Lja5g0253 406 Pfam UBA/TS-N domain 361 396 IPR015940 -
Lja5g0253 406 Pfam UBA/TS-N domain 171 209 IPR015940 -
Lja5g0253 406 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lja5g0253 406 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lja5g0253 406 MobiDBLite consensus disorder prediction 132 151 - -
Lja5g0253 406 SMART CBM 278 321 IPR006636 -
Lja5g0253 406 SUPERFAMILY XPC-binding domain 277 341 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lja5g0253 406 CDD UBA2_RAD23_plant 357 399 - -
Lja5g0253 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 169 212 IPR015940 -
Lja5g0253 406 Gene3D - 353 400 - -
Lja5g0253 406 MobiDBLite consensus disorder prediction 78 112 - -
Lja5g0253 406 Gene3D - 269 336 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lja5g0253 406 CDD Ubl_Rad23 1 74 - -
Lja5g0253 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 358 399 IPR015940 -
Lja5g0253 406 SMART uba_6 361 398 IPR015940 -
Lja5g0253 406 SMART uba_6 171 211 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0253 Lja-Chr5 2208867 2213586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0253 1 68 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.176 6.19e-10 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0253 5 2208867 2213586 Lja5g0253 5 2208867 2213586 ECH