Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0250 ATGGCCACCGATGCTCACGACTCTCGTCGCAAGCACCACCGATCATCCACTCCGGAGGACGACGACAGATCCTCCAAGCGCCACAAGCACCGCCACCACAGCCACCGCCACCGCACCAAAAAGCGCGATGAAGAGATTCAATACGACGACGGCGGTGCAGTCGCCGCGGTTCCTTCTCCAACTCCCGCCCCTAATCCCGACGAGGACGTGGAGGAAGGAGAGATTCTCGAGGACGATGCTCTTAACGGTGAGGTTAGGAAGAAGCAGTTGGAATCTGATGCTGAATCTGGTGAAATCGAGGTGAAAGGAGATCGAGATGTTCGATCCGATGAGAAAAATCTGGGATTTCCTGCTAAAAGTTCTAAGGCTAAAGTTCATGAAGATGATGATGGTTCCAGCCACTCAAGAGCTAAGACTCGAGGTGAGAGTGGTGTTCGAGCTAGTAGAGATGGTTTGGGCAATGGGTATCCGGATCCTAAATATTCGAAAGCGGATAAGAGGCAGAATGGGGAACTTGGACATTTTAAAGGAAATGAGAAGCTAAAAGGTGACTTTGATGATGAAGCCCCGGAGGCTAATGGGAAGAAAGTGAATTACCATCGGAATTCATCTTCTGAAAGTGGAGGAGAAAAAATTAGGATGTCAGAACATTCTCCTTCTCATGATAGATTGAGAAGCCGATCAAGATCAACTGATCATACCAGGGACAGGTCTCGTTCTCGCAGTATTGTGGATGAATACGCCCATCCCAAGAGAAGGTACTCTAGGGAACCCCTTTATCATACTAGTAGGCATAAGACTGACTGTGACCTTGATGAGGAAAGAGTGAGAGACGGCAAAAGGGAGCATCAGCATGGCAGTATAGATTTGGTGGAAGATGATAGAAGAGAACACAGCACCAGATATCACAGTCGGGAGGCTCGTGATAGAGGTAGGAGTAGGGACAGAGATGTGGAAAGAGAACTACATCGGGAAAGAAAACGGGCGGAAACAAGCCGGAATAAGGAGGTTGATTTGGTGCGCAAAAGGGAAAAAGAACGTCAAGTGAGTCATGAGAAGTATAGAAGGGATGGGGAGAAAGATAGGATCAGGGAAAGGGAGGAGGATAGAGATAGGAGGAGAGAAAAGGAAAGAGATAGGAGCTTGGAGACAGTGTTTGAGAGGGATAGGAGAAGGGAAAAGGAGAGAGATAGGAGTAGGGACAGAGCAAGGGGTGGCCAGAGAGATAGAGTTCTGGAAAGTGAAAGGGATTATAGGAATCGGGAAAGGGATAACATTCAGGAGAGGGAGAGGCGAGATGATAGATATAGGCACACAGATAGAGATTTTGCTGGTGGTAAGGATAAGTATCTGCGTCATGAGGATGGTAATGACAGTGGAGATAGATATAGAAAACATTCCAGACGTGAAGAAAACGAATACCATGCAGAGAGAAGAAGAAACTCTGATTCCCATGGAAAAGTTTATAACTCTATGGGAACTACCATAGAGGAGAAGGAAAGAGAGGTTGAACAGGATGACTTTGATGATGATACATTGCAATTACCTGAACAAGAAGAGGACGATCTCAACAGGATCAAAGAGGAGAGTAGAAGGAGAAGGGAGGCAATAATGGAGAAATACAAGAAGCAGAATCAGGAAGTAGATCAAGCTAGTGGAAATGAAGGACAAGATATGAATGCAGACACTCCTGCTGACAATCCTGAAGTGATGGATGGTATGAATGATGATGTTGATGATGTGGAAGCAGCAGAACCATCATTTGCTGTTGGGAAATCTCCTGAAAATGTGAATGCTGCCTCCAAGATATCTGGTGCTGGGGGTCTGGGAGAGGGTACTCCAAAGAGTGAGAGGTCAGCTGACAAGTTTTGTGATGATATATTTGGCGAGACACCAACTGGAGTTCGGAAATCAGGGAAAGGAGATGGTTTACTGATTGAGAGGGCTGGCCTACATGATAATTGGGATGATGCAGAGGGTTATTACAGCTATCGGTTTGGTGAAATACTTGATGGCCGATATGAAGTTGCTGCCGCACATGGGAAGGGTGTCTTTTCCACAGTTGTACGGGCAAAAAATCTGAACACCGGTAATGGTGAGCCAGAAGAAGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTAGTGATATTGAAGAAGTTAGTAGGTGCAGATCCAGATGATAAACGTCACTGTGTTCGTTTCCTTTCAAGTTTTAAGTACCGAAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGAGCATATGCAAAACAGCTTTTCATTGCACTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCTGATAATATGCTGGTGAATGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTCTATCGTGCTCCTGAAATAATACTTGGCTTGCAGTATGATCATCCATTGGATATTTGGTCTGTGGGCTGTTGTTTGTATGAGTTGTATACAGGAAAGGTTCTTTTTCCAGGGCTTACAAACAATGATATGTTGCGGCTTCACATGGAATTGAAGGGCCCCTTTCCAAAAAAAATTCTTCGGAAGGGAGCATTTACTGAACAACATTTTGATCATGACCTGAATTTTCTTGCTACAGAGGAGGATCCTGTAACAAAAAAGACCATAAAGCGAATGATTTTCAACATAAAGCCGAAAGACATTGGGACAATCATCAGTGGCTCTCCTGGGGAGGATCCGAAAATGTTATCTAACTTCAAAGACCTTTTGGACAAAATTTTCGTATTGGATCCAGACAAGAGGTTGACAGTGTCACAAGCATTGAACCACCCATTCATCACTGGCAAGTGA 2979 0.4424 MATDAHDSRRKHHRSSTPEDDDRSSKRHKHRHHSHRHRTKKRDEEIQYDDGGAVAAVPSPTPAPNPDEDVEEGEILEDDALNGEVRKKQLESDAESGEIEVKGDRDVRSDEKNLGFPAKSSKAKVHEDDDGSSHSRAKTRGESGVRASRDGLGNGYPDPKYSKADKRQNGELGHFKGNEKLKGDFDDEAPEANGKKVNYHRNSSSESGGEKIRMSEHSPSHDRLRSRSRSTDHTRDRSRSRSIVDEYAHPKRRYSREPLYHTSRHKTDCDLDEERVRDGKREHQHGSIDLVEDDRREHSTRYHSREARDRGRSRDRDVERELHRERKRAETSRNKEVDLVRKREKERQVSHEKYRRDGEKDRIREREEDRDRRREKERDRSLETVFERDRRREKERDRSRDRARGGQRDRVLESERDYRNRERDNIQERERRDDRYRHTDRDFAGGKDKYLRHEDGNDSGDRYRKHSRREENEYHAERRRNSDSHGKVYNSMGTTIEEKEREVEQDDFDDDTLQLPEQEEDDLNRIKEESRRRREAIMEKYKKQNQEVDQASGNEGQDMNADTPADNPEVMDGMNDDVDDVEAAEPSFAVGKSPENVNAASKISGAGGLGEGTPKSERSADKFCDDIFGETPTGVRKSGKGDGLLIERAGLHDNWDDAEGYYSYRFGEILDGRYEVAAAHGKGVFSTVVRAKNLNTGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKILRKGAFTEQHFDHDLNFLATEEDPVTKKTIKRMIFNIKPKDIGTIISGSPGEDPKMLSNFKDLLDKIFVLDPDKRLTVSQALNHPFITGK* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0250 992 MobiDBLite consensus disorder prediction 206 485 - -
Lja5g0250 992 CDD STKc_PRP4 673 989 IPR044092 GO:0004674|GO:0006468|GO:0045292
Lja5g0250 992 Gene3D Transferase(Phosphotransferase) domain 1 734 990 - -
Lja5g0250 992 PANTHER DUAL SPECIFICITY PROTEIN KINASE 343 992 - -
Lja5g0250 992 MobiDBLite consensus disorder prediction 518 546 - -
Lja5g0250 992 MobiDBLite consensus disorder prediction 1 567 - -
Lja5g0250 992 MobiDBLite consensus disorder prediction 598 620 - -
Lja5g0250 992 ProSiteProfiles Protein kinase domain profile. 674 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0250 992 MobiDBLite consensus disorder prediction 79 145 - -
Lja5g0250 992 MobiDBLite consensus disorder prediction 502 517 - -
Lja5g0250 992 Pfam Protein kinase domain 678 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0250 992 MobiDBLite consensus disorder prediction 160 195 - -
Lja5g0250 992 SMART serkin_6 674 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0250 992 MobiDBLite consensus disorder prediction 1 26 - -
Lja5g0250 992 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 343 992 - -
Lja5g0250 992 Coils Coil 527 554 - -
Lja5g0250 992 SUPERFAMILY Protein kinase-like (PK-like) 661 991 IPR011009 -
Lja5g0250 992 MobiDBLite consensus disorder prediction 547 561 - -
Lja5g0250 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Lja5g0250 992 Gene3D Phosphorylase Kinase; domain 1 644 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0250 Lja-Chr5 2186546 2196019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0250 627 991 MAP Kinase Gene Family AT2G18170 30.709 5.75e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Lja5g0250 Pkinase 2.2e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0250 5 2186546 2196019 Lja5g0250 5 2186546 2196019 ECH