Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0247 ATGGCTGATGAACCACTATATCCAATAGCGGTGCTTATAGACGAGCTCAAAAACGATGATATCCAGCTGCGTTTGAATTCAATTCGCAGGCTATCGACGATTGCGCGTGCTCTCGGGGAGGAGCGAACGCGTAAAGAGTTGATTCCGTTTTTGATTGAGAATAATGATGATGATGATGAGGTGCTTCTTGCCATGGCAGAGGAGTTGGGAGTATTTATTCCTTATGTTGGGGGAGTGGAGCATGCCAGTGTGTTGCTTCCACCTCTTGAGACACTTGGCAGTGTTGAGGAAACTTGTGTGAGGGATAAAGCTGTGGAGTCACTTTGTAGAATTGGATCTCAGATGAGGGAGAGTGATTTGGTTGAATTTTTCATACCCTTGGTGAAGAGATTGGCAGCAGGTGAGTGGTTTACTGCCCGAGTCTCTGCATGTGGACTATTCCACATTGCATACCCAAGTGCTCCAGAAAACTCGAAGACAGAGCTGAGATCAATATACAACCAATTATGTCAGGACGACATGCCTATGGTTAGAAGATCTGCTGCAGCAAACCTTGGGAAATTTGCTGCAACTGTTGAATATGCTCATTTGAAGGCAGACATTATGTCAATTTTCGAGGAACTTACGCAGGATGATCAAGATTCTGTCAGATTGTTGGCTGTGGAGGGCTGTGCTGCTCTTGGCAAGCTGTTGGAGCCACAAGATTGTGTTTCCCATATACTCCCGGTTATTGTCAGTTTCTCCCAGGATAAGTCTTGGCGTGTGCGTTACATGGTTGCAAATCAGTTATACGAGCTCTGTGAAGCTGTAGGCCCTGAACCTACCAGAACGGAATTGGTCCCTGCCTATGTGCGGTTGCTTCGAGATAATGAAGCTGAAGTACGCATAGCAGCTGCCGGAAAAGTAACTAAGTTTTGCCGGATTTTAAGTCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGGAATTGTCATCAGATTCTTCTCAGCATGTCCGCTCTGCTTTGGCTTCTGTAATAATGGGAATGGCTCCAGTGTTAGGAAAGGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTGCCTTTTGAAGGATGAATTTCCTGATGTGCGCCTAAACATCATCAGCAAGCTTGATCAAGTGAATCAGGTTATCGGAATCGATCTGTTATCTCAATCTTTATTACCAGCAATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTCCGGCTTGCAATTATAGAGTATATACCCTTATTGGCAAGTCAATTGGGGGTTGGTTTTTTCGATGACAAGCTTGGCAATCTCTGCATGCAGTGGTTACAAGATAAGGTTCATTCAATTCGTGAAGCAGCTGCCAACAACATAAAACGTCTTGCTGAAGAATTTGGTCCTGATTGGGCTATGCAGAACATAATTCCACAGGTTTTGGATATGATTAACAATCCACACTATTTGTATCGGATGACCATTCTTCGAGCTATCTCCCTGCTTGCTCCTGTAATGGGATCTGAAATCACTTGTTCAAAATTATTGCCAGTTGTTGTTTCAGCATCAAAGGACAGAGTGCCCAACATAAAGTTCAATGTGGCAAAAGTATTAGAGTCCATCTTCCCCATTGTTGATCAGTCTGTGGTGGAGAAGACAATCCGCCCTTGTCTAGTTGAGCTCAGTGAGGATCCTGATGTTGACGTGCGATTCTTTTCCAACCAAGCGCTCCAGGCAATTGATCATGTCATGATGTCTACCTAG 1758 0.4437 MADEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLIENNDDDDEVLLAMAEELGVFIPYVGGVEHASVLLPPLETLGSVEETCVRDKAVESLCRIGSQMRESDLVEFFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPENSKTELRSIYNQLCQDDMPMVRRSAAANLGKFAATVEYAHLKADIMSIFEELTQDDQDSVRLLAVEGCAALGKLLEPQDCVSHILPVIVSFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPDLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLCLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGNLCMQWLQDKVHSIREAAANNIKRLAEEFGPDWAMQNIIPQVLDMINNPHYLYRMTILRAISLLAPVMGSEITCSKLLPVVVSASKDRVPNIKFNVAKVLESIFPIVDQSVVEKTIRPCLVELSEDPDVDVRFFSNQALQAIDHVMMST* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 357 395 IPR021133 -
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 552 585 IPR021133 -
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 279 317 IPR021133 -
Lja5g0247 585 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 3 584 - -
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 396 434 IPR021133 -
Lja5g0247 585 Pfam HEAT repeat 240 268 IPR000357 GO:0005515
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 201 239 IPR021133 -
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 240 278 IPR021133 -
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 318 356 IPR021133 -
Lja5g0247 585 Gene3D - 2 581 IPR011989 -
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 8 46 IPR021133 -
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 162 200 IPR021133 -
Lja5g0247 585 SUPERFAMILY ARM repeat 6 578 IPR016024 -
Lja5g0247 585 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, PUTATIVE-RELATED 3 584 - -
Lja5g0247 585 Pfam HEAT repeats 362 458 - -
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 474 512 IPR021133 -
Lja5g0247 585 ProSiteProfiles HEAT repeat profile. 513 551 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0247 Lja-Chr5 2167032 2173558 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0247 5 2167032 2173558 Lja5g0247 5 2167032 2173558 ECH