Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0246 ATGCAAAGCTTCCAGACAACAACTGAATCAAGCTCACCACTCTATACTCATTCTTCCTTCTTCCTTCGGGGAGATGATGACACCACCCAAAATCCAACGCTGTTCTGGGATATTCAACGTTCATTTCAGCAACAAGATGCTTCGAGTGATGTTGCTGTTCTTGCAAGTAACTTGCAGTGTGCGACATTCAACACTAACATTGGTGGAGGGTGTGCTTCAACAGGGGAAGTGTGCATTGAAACAGGGCAAGAGCCAATGTTTCAGAGAGGAACCATTTTTAACGCCGTGCCGCTGGGGAACGAGAATTGGGGTGATTCAGGCATGGCTGATAACAGTCAACAAACTGAAGATACCTCCACTGATGTTGATACTGATGATAAAAACCAATGTTTCTCTAACGTGTCTTGGTACAATGGAGTTCAGCAAGAGCCACTTGTTGTAGTTATGGACTCCAAGGATCAAAGTAAGGCTAAGGTTAAAGATGAAGACCAGAAGACTCTTCGTAGACTGGTCCAGAATAGGGAGGCTGCAAGGAAGAGTCGATTAAGGAAAAAGGCATATGTGCAGCAATTGGAGAACAGTAGAGTTAGGCTTGCTCAAATGGAGCAAGAGCTCCAAAGAGTACGTCAGCAGGATGTGTCAGGAATTACAGGGGATCATGCTCACTCAGTTGTTGCAAATGGTGTTTTAGCATTCGACATGGACTATGCTCGGTGGGTTGATGAGCATCAACATCTGATTAATGGCATAAGATCAGCCATAAACTCTCAAATGGTTGATAAGGAGCTGCATCTTCTGGTTGATGGAGTCATGGCACATTATGATGAATTATGTAGGTTGAAGAGTATAGGTGCTAAGGCTGATATATTTCACATGCTTTCTGGGATGTGGAAGACACCTGTAGAAAGATGCTTCATGTGGCTTGGTGGATACCGTTCATCTGAACTTCTCAAGATCGTTAGGAACCATCTTGAGCAGTTAACCGATCAGCAGCTGATAGGCATTTACAATCTGCAACAGTCTTCTCAGCAAGCCGAGGATGCTTTATCTCAAGGGATGGAAGCATTGCAACAATCTCTTTCAGAAACACTTTCCTCCACATCCCTAGGGCCTACTTGTTCTGGAAATGTTGCTGAGTACATGGGGCAAATGGCTATTGCAATGGCCAAGCTTGCCTCACTAGAGAGTTTCCTTCATCAGGCTGACCTGTTGAGGCAACAAACCATGCATCAGTTGCAGCGAATTTTGACGACGAACCAAGCTGCTCGGGCTCTCGTTGTCATAAATGATTTCATTTCACGACTTCGGGCACTTAATTCATTATGGTCAGCTTGCCCTAAAGAGTACTAG 1350 0.4467 MQSFQTTTESSSPLYTHSSFFLRGDDDTTQNPTLFWDIQRSFQQQDASSDVAVLASNLQCATFNTNIGGGCASTGEVCIETGQEPMFQRGTIFNAVPLGNENWGDSGMADNSQQTEDTSTDVDTDDKNQCFSNVSWYNGVQQEPLVVVMDSKDQSKAKVKDEDQKTLRRLVQNREAARKSRLRKKAYVQQLENSRVRLAQMEQELQRVRQQDVSGITGDHAHSVVANGVLAFDMDYARWVDEHQHLINGIRSAINSQMVDKELHLLVDGVMAHYDELCRLKSIGAKADIFHMLSGMWKTPVERCFMWLGGYRSSELLKIVRNHLEQLTDQQLIGIYNLQQSSQQAEDALSQGMEALQQSLSETLSSTSLGPTCSGNVAEYMGQMAIAMAKLASLESFLHQADLLRQQTMHQLQRILTTNQAARALVVINDFISRLRALNSLWSACPKEY* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0246 449 Pfam bZIP transcription factor 164 195 IPR004827 GO:0003700|GO:0006355
Lja5g0246 449 SUPERFAMILY Leucine zipper domain 165 209 IPR046347 GO:0003700|GO:0006355
Lja5g0246 449 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 168 183 IPR004827 GO:0003700|GO:0006355
Lja5g0246 449 ProSiteProfiles DOG1 domain profile. 229 445 IPR025422 GO:0006351|GO:0043565
Lja5g0246 449 PANTHER TRANSCRIPTION FACTOR TGA9 34 448 - -
Lja5g0246 449 Coils Coil 184 211 - -
Lja5g0246 449 Gene3D - 165 212 - -
Lja5g0246 449 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 163 207 IPR004827 GO:0003700|GO:0006355
Lja5g0246 449 SMART brlzneu 161 229 IPR004827 GO:0003700|GO:0006355
Lja5g0246 449 MobiDBLite consensus disorder prediction 102 125 - -
Lja5g0246 449 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 34 448 - -
Lja5g0246 449 Pfam Seed dormancy control 248 321 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0246 Lja-Chr5 2160142 2164190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0246 1 448 bZIP Transcription Factor Family AT1G68640 54.274 1.05e-152 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja5g0246 DOG1 6.3e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0246 5 2160142 2164190 Lja5g0246 5 2160142 2164190 ECH