Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4205 ATGGAGGAGCAACAGATGAAGTGTCCACGCTGCAAATCTCTAGACACAAGGTTCTGCTACTTCAACAACCATAGTCGTTCACAACCTCGATACTATTGCAAAGAATGTAAAAGGAGATGGACACTAGGTGGAGCCTTGAGGGACATACCCATAGGTGGTGTTGCTGGTTCCCGACCCTGTAGACCGAGGCATGCCAGAAGCACTTCTTCGCCATCTGCCTCCGAGAGTGGCGATGCATTTAATATTGTGGATTTTTCTGATTTGTCCCTCCTAAACGAGTGGGTATGCTCACTACCAATTGCATACACCTATCATCAAGGTAGTGGAGGTGGTCTTGGGGCTCGTTACTTGTCTGCTACTGTTGTCGAAGTCCAATCACTAAACGCTTCATCACAAGCACCTTTCAACCAATCTCTGAATGGTGGCGGTATTAATGTTGGCGCATCCACAATTTCTAGTTCTACATCTACCTTAGTGGAACCTCTACAATCACTAGTTCAAAACCAGTTGGTAAGTCCTTCAATACCAATTACCAACACCTATCATTATGGTAGTGTTGGTGGTGGGGCCCATGCTGTTTATTTGTCCTCTTTTGTAGGAGTTCAGTCTCTGAATCATGACAATGTTAATGTTGTGGGTTCAAATCCAACCACAAATACTCGTTCTTCATCTATCTTGACATTGCCACAATCACTGGTTCAAAACCAGATAATAAGTCCTTCGCTACCAATTACTAGCACCTATGATCATAGTAGTGTTGGTGGTGAGGCCCAGAGTATGGCTGATAACAATGATATTGGTGCTGCTGATGTTGCTTCTCACTACCCTGATCATTGGTCACAGAGCTTTATCAACACTGATAACAATGTGGCTACTTCTAATGTTGTTTCGTGGGATGATATGTTCAACATCACTTCCAATATCAGTGGTGGTAACTCTGATATGAACTTTTCCATGCCAAATCATGGTCATGGACTCCCTGGCTATGATGCCCCTCCTTCATACTAG 1008 0.4395 MEEQQMKCPRCKSLDTRFCYFNNHSRSQPRYYCKECKRRWTLGGALRDIPIGGVAGSRPCRPRHARSTSSPSASESGDAFNIVDFSDLSLLNEWVCSLPIAYTYHQGSGGGLGARYLSATVVEVQSLNASSQAPFNQSLNGGGINVGASTISSSTSTLVEPLQSLVQNQLVSPSIPITNTYHYGSVGGGAHAVYLSSFVGVQSLNHDNVNVVGSNPTTNTRSSSILTLPQSLVQNQIISPSLPITSTYDHSSVGGEAQSMADNNDIGAADVASHYPDHWSQSFINTDNNVATSNVVSWDDMFNITSNISGGNSDMNFSMPNHGHGLPGYDAPPSY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4205 335 Pfam Dof domain, zinc finger 4 54 IPR003851 GO:0003677|GO:0006355
Lja4g4205 335 ProSitePatterns Zinc finger Dof-type signature. 8 44 IPR003851 GO:0003677|GO:0006355
Lja4g4205 335 ProSiteProfiles Zinc finger Dof-type profile. 6 60 IPR003851 GO:0003677|GO:0006355
Lja4g4205 335 PANTHER DOF ZINC FINGER PROTEIN DOF5.1 3 198 - -
Lja4g4205 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 198 IPR045174 GO:0003700|GO:0006355
Lja4g4205 335 MobiDBLite consensus disorder prediction 57 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4205 Lja-Chr4 75497018 75498279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4205 3 85 C2C2-Dof Transcription Factor Family AT3G45610 46.512 4.88e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja4g4205 zf-Dof 1.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4205 - - lja:Lj4g3v0190020.1 569.696