Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4200 ATGGGAACTGTTTGGCTATCCAAACTGGTTGCAACCACCATGTTAGTGGCGGTGTTGGGTTTACTAGCAGAGGCTCAAATAGAAGCCAAGTTCAAGTGCATCTCAGAGAACGCCCCGTGTCACGCACTCGCCGACTACTCTCACCCAAACGGCACCACCCTCCGCCGCATCCAAACCCTCTTCACCGTGAAATACCTCCCGGACATTCTCGGCGCCAACAACCTCCCCGCCAACACCACGCGCGTGGCTCCCGACCAGGTCATCAAAGTCCCCTTCCCCTGCCGCTGCAGCAACGGCACCGGCCTCTCCAACAAGGTCCCTCGCTACAAGATCAAGAAAGGGGACACGCTGTATGACATAGCCACCACCGTTTTCGCTGGTTTGGTGAAGTACCCGCAGATCCAGGTGGCGAATGAGATCCCTGATGCGAATAACATCACCGCCGGGGACACGATTTGGATTCCTCTGCCGTGCAGCTGCGACGCGGTGGCCGGGAGCAGCGTGGTGCACTACGCGCATCTTGTGCAGGATGGGAGTAGCGTTGAGTCCATTGCGCAGGAGTATGGTTCCACTCAGCAGATTCTTCTCTCCCTCAATGGGATTAGCGACCCCAAGTTGCTTCAGGCTCGTCAGCTGCTCGATGTTCCGCTCCAAGCTTGTTCATCGAGTGTGAAAAATGATTCACCGGACTACCCTTTGCTTGTGCCAAATGCTACCTATGTTTATACGGCTAAGGAATGCGTCAAATGCAAGTGTGACTCCAGTAACAATTTCAGATTACAATGCGAACCATCCCAACACAAACCAATCAACGATTGGTCCGTTTGCCCATCCATGGAATGCTCAAAGAACGTCTTGATTGGCAACACCACCTCCACAGATTCTTGCAACCGCACAATTTGTGACTATGCTGGTTATAGCAACTCCAAAATCTCAACCATTCTTGCAACACAGAACACTTGTGCTGTGCCGCCGAGTGGTTCAGGAACATCAAGTGGTTCTGGTTCAGGGGATTCTGGTTCAGGAGCATCAAGGAGCAACTTGCATGGCTGGGTTTGGAGTAGTCCTCTCATTGTCATTCACTTCCTCCTCTTCGTTGTCTTTCTCTTGTAG 1113 0.5265 MGTVWLSKLVATTMLVAVLGLLAEAQIEAKFKCISENAPCHALADYSHPNGTTLRRIQTLFTVKYLPDILGANNLPANTTRVAPDQVIKVPFPCRCSNGTGLSNKVPRYKIKKGDTLYDIATTVFAGLVKYPQIQVANEIPDANNITAGDTIWIPLPCSCDAVAGSSVVHYAHLVQDGSSVESIAQEYGSTQQILLSLNGISDPKLLQARQLLDVPLQACSSSVKNDSPDYPLLVPNATYVYTAKECVKCKCDSSNNFRLQCEPSQHKPINDWSVCPSMECSKNVLIGNTTSTDSCNRTICDYAGYSNSKISTILATQNTCAVPPSGSGTSSGSGSGDSGSGASRSNLHGWVWSSPLIVIHFLLFVVFLL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4200 370 Gene3D LysM domain 170 226 IPR036779 -
Lja4g4200 370 Gene3D LysM domain 105 163 IPR036779 -
Lja4g4200 370 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 27 322 - -
Lja4g4200 370 CDD LysM 109 154 IPR018392 -
Lja4g4200 370 SUPERFAMILY LysM domain 108 156 IPR036779 -
Lja4g4200 370 Pfam LysM domain 174 216 IPR018392 -
Lja4g4200 370 Pfam LysM domain 109 155 IPR018392 -
Lja4g4200 370 ProSiteProfiles LysM domain profile. 107 154 IPR018392 -
Lja4g4200 370 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 27 322 - -
Lja4g4200 370 CDD LysM 173 215 IPR018392 -
Lja4g4200 370 SUPERFAMILY LysM domain 171 216 IPR036779 -
Lja4g4200 370 ProSiteProfiles LysM domain profile. 171 215 IPR018392 -
Lja4g4200 370 SMART LysM_2 172 216 IPR018392 -
Lja4g4200 370 SMART LysM_2 108 155 IPR018392 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4200 13 313 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 47.923 7.95e-90 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4200 - - gmx:100804190 468.388