Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4189 ATGGAGATGAGCACGTTGGCTTCGTTCCCTTGCTTCTCAACATCAAAACCTTCTCTTGTGAAGCTCAGGCCATCATCATCGTTATCTATGCGACCTGACTACCCTCTTGCAAGCAAAATTGTTGTTAAAAATTTACCATATTCTACTGGTGAGACTACTTTGCAGAAGGAATTTTCAAATTTTGGCAAGATAGCTGAAGTTAAAATGGTTAAAGATGCAAACACGAAAAGATCTAAGGGGTATGCTTTTATTCAATACACATGTCGAGACGCTGCCATGCTTGCTCTAGAAACCATGGATCAAAAGGATTTTTATGGAAGGACGATCTATGTCGAAATTGCAAAACTGGGTTGGGATGATTTTGATGCACCCATAAAGACCTCAGGGCCCCCAAAGAAGTGGAATATTCCAGAGGAAGAGGAAGTGGTAGATTGCTGGTACTGA 444 0.4122 MEMSTLASFPCFSTSKPSLVKLRPSSSLSMRPDYPLASKIVVKNLPYSTGETTLQKEFSNFGKIAEVKMVKDANTKRSKGYAFIQYTCRDAAMLALETMDQKDFYGRTIYVEIAKLGWDDFDAPIKTSGPPKKWNIPEEEEVVDCWY* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4189 147 CDD RRM_SF 40 112 - -
Lja4g4189 147 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 31 141 - -
Lja4g4189 147 SUPERFAMILY RNA-binding domain, RBD 22 119 IPR035979 GO:0003676
Lja4g4189 147 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 31 141 - -
Lja4g4189 147 SMART rrm1_1 39 112 IPR000504 GO:0003723
Lja4g4189 147 Gene3D - 16 119 IPR012677 -
Lja4g4189 147 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Lja4g4189 147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4189 Lja-Chr4 75380189 75383433 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4189 4 75380189 75383433 Lja4g4189 4 75380189 75383433 ECH