Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4183 ATGGCGCCGGGAATTCAACTAACCTCCGCCGGCGCCGTCGCCGGCGATGACTCCGTTGACCTCGAGGACGTTCGCCTGCTCGATTCCTACGAGAAATACGACGACGGCAACACCACGAACACGAAGCGTATTCAGGTCAGCATCTCCGGCATGACTTGCGCCGCCTGCTCCAACTCCGTCGAAGCCGCTCTCAACTCCGTCGCCGGCGTCTCACACGCCTCCGTCGCGCTTCTCCAGAACAGAGCCGACGTTGTCTTCAACCCAACCCTCGTCAAGGAAGAAGACATTAAGAATGCGATTGAAGATGCAGGTTTCGATGCTGAGATCTTACCGGAACCGGCTTCGGTTGGATCGGACAAACGCGGTGGCGCCGCCGTGGTGGTGGGACAGTTCACGATTGGTGGGATGACTTGTGCGGCGTGTGTGAACTCTGTTGAAGGCATCCTGAATGGCCTCACCGGAGTGAACAAAGCAGTGGTGGCTTTAGCCACTTCCTTAGGCGAAGTTGAGTATGATCCCAACGTGATTAGCAAGGAAGAGATTGTTGGTGCTATTGAAGATGCTGGTTTTGAGGGTTCGTTTGTGCAGAGCAGTGGTCAGGACCAGGTGGTTTTAGGGGTTGTTGGTTTGAGCTCTTTGGTTGATGCTCGGATTTTGGAAGGTGTGTTGGGTGGGATGAAAGGGGTGAGGCAGTTTCGGTTTGATCCTTTGTTGAATGAATTGGATGTGGTGTTTGATCCTGAAGTTACTAGTTCTAGAGCATTGGTTGATGAGATCCACGCCGGGAGTAACGGCATGTTCATGTTGCATGTTAGGAATCCTTATGCTAGAATGGCTTCTAAAGATGTTTCAGAGACCTCAAATATGTTCAGACTTTTTCTTTCCAGCTTGTCTCTTAGTATTCCTCTCTTCTTCATGGGGGTAGTTTGTCCCCATATACCATTGTTTTACTCCTTATTACTTTGGAGATGTGGGCCTTTCCTCATGGATGATTGGCTGAAGTGGGCATTGGTGAGTCTCATCCAATTTGTGATTGGAAAGCGATTCTACATAGCAGCTTTCAGAGCTCTTAGAAATGGTTCAACTAACATGGATGTCCTGGTTGCTCTGGGAACTACAGCCTCTTATGTTTATTCGGTTTGTGCTCTTCTGTATGGTGCTGCTACTGGATTCTGGTCTCCAACGTACTTTGAAACCAGTGCTATGCTGATAACATTTGTATTGCTGGGCAAATATTTGGAATGTCTTGCCAAAGGAAAGACATCTGATGCCATTAAGAAATTAGTAGAACTTACTCCTGCAACAGCTTTATTGGTTGTCAAAGATAAAGGTGGTAAACCTGTTGAAGAAAGGGAAATAGATTCTTTGCTCATTCAGCCCGGGGACACATTAAAAGTTCTTCCTGGGACAAAGGTTCCTGCTGACGGTACGGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACTGGTGAATCTATACCTGTTTTGAAGGAGGTCGATGCATCTGTTATTGGAGGTACAATCAATTTGCATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAATCAGATAATTAGTTTGGTGGAGACCGCCCAGATGTCTAAAGCTCCCATACAAAAGTTTGCTGATTATGTTGCAAGTATATTTGTTCCCACAGTTGTGTCTTTGTCAGTGTTGACATTTTTGTGTTGGTACCTTGCCGGGGTTCTTGGAGGTTACCCAGAAGACTGGCTTCCAGAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTTCAATATCTGTTGTGGTGATTGCATGTCCCTGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGAGTTGGAGCCAACAATGGTGTATTAATCAAAGGAGGAGATTCCTTGGAAAGGGCTCAGATGGTGAAGTATGTCGTATTTGATAAAACAGGCACTTTAACCCAGGGGAAAGCCACTGTTACTGTTGCCAAGGTGTTCTCAGGAATGGACCGTGGAGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGGAAAAGCAATATTGCAATATGCACGCCATTTTCATTTCTTTGATGGGTCCGCACCAACCAATGGTACCCAGAATGATGCCAAGGAGTTGAAGTCAGGGTGGCTTTATGATGCCTCAGATTTCTCTGCTATTCCAGGAAGGGGTGTGCAGTGCTTTATAGGCGGGAAGCGTATTTTGGTTGGTAATAGGAAGCTGCTGGAGGAAAATGGCATCAATATTTCTACTGAAGTGGAGAACTTCATCGTAGAGCTTGAAGAAGGTGCAAAGACAGGGATACTAGTAGCATACGATGATGTATTTACTGGAGTCCTAGGGGTTGCAGACCCACTAAAGCGAGAAGCTTCTGTCGTCATAGAGGGCCTCCAGAAAATGGGAGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCCGTTGCCAAGGAGGTTGGTATTCAAGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAAGCTGATGTTATTCGTTCATTCCAAAAAGATGGAAGTATTGTTGCAATGGTGGGTGATGGCATCAATGATTCTCCTGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGGACAGATATTGCAATAGAAGCTGCTAACTATGTGTTGATGAGAGATAATTTGGAAGATGTCATCACAGCCATTGATCTTTCAAGGAAGACCTTTTCTCGTATTCGGTTGAATTATGTATTCGCGATGGCTTACAATGTTATTGCCTTACCAGTTGCTGCTGGGGCTTTATTTCCTTTACTGGGGATCAAGCTGCCACCATGGGTAGCCGGTGCATGCATGGCGCTTTCGTCGGTGAGTGTTGTATGCTCTTCTTTGCTTCTCAGAAGATATAGAAAACCCAGACTAACTACAATACTTGAAATTATTGTAAATTAA 2991 0.4607 MAPGIQLTSAGAVAGDDSVDLEDVRLLDSYEKYDDGNTTNTKRIQVSISGMTCAACSNSVEAALNSVAGVSHASVALLQNRADVVFNPTLVKEEDIKNAIEDAGFDAEILPEPASVGSDKRGGAAVVVGQFTIGGMTCAACVNSVEGILNGLTGVNKAVVALATSLGEVEYDPNVISKEEIVGAIEDAGFEGSFVQSSGQDQVVLGVVGLSSLVDARILEGVLGGMKGVRQFRFDPLLNELDVVFDPEVTSSRALVDEIHAGSNGMFMLHVRNPYARMASKDVSETSNMFRLFLSSLSLSIPLFFMGVVCPHIPLFYSLLLWRCGPFLMDDWLKWALVSLIQFVIGKRFYIAAFRALRNGSTNMDVLVALGTTASYVYSVCALLYGAATGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLVVKDKGGKPVEEREIDSLLIQPGDTLKVLPGTKVPADGTVTWGSSYVNESMVTGESIPVLKEVDASVIGGTINLHGVLHIQATKVGSDTVLNQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLSVLTFLCWYLAGVLGGYPEDWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLERAQMVKYVVFDKTGTLTQGKATVTVAKVFSGMDRGEFLTLVASAEASSEHPLGKAILQYARHFHFFDGSAPTNGTQNDAKELKSGWLYDASDFSAIPGRGVQCFIGGKRILVGNRKLLEENGINISTEVENFIVELEEGAKTGILVAYDDVFTGVLGVADPLKREASVVIEGLQKMGVIPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVIRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAANYVLMRDNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVIALPVAAGALFPLLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPRLTTILEIIVN* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4183 996 Pfam Heavy-metal-associated domain 46 106 IPR006121 GO:0046872
Lja4g4183 996 Pfam Heavy-metal-associated domain 131 191 IPR006121 GO:0046872
Lja4g4183 996 TIGRFAM TIGR00003: copper ion binding protein 130 191 IPR006122 GO:0005507
Lja4g4183 996 TIGRFAM TIGR00003: copper ion binding protein 44 107 IPR006122 GO:0005507
Lja4g4183 996 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 364 979 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lja4g4183 996 PRINTS P-type cation-transporting ATPase superfamily signature 486 500 - -
Lja4g4183 996 PRINTS P-type cation-transporting ATPase superfamily signature 817 827 - -
Lja4g4183 996 PRINTS P-type cation-transporting ATPase superfamily signature 650 664 - -
Lja4g4183 996 PRINTS P-type cation-transporting ATPase superfamily signature 795 806 - -
Lja4g4183 996 PRINTS P-type cation-transporting ATPase superfamily signature 870 889 - -
Lja4g4183 996 PRINTS P-type cation-transporting ATPase superfamily signature 893 905 - -
Lja4g4183 996 CDD HMA 130 191 IPR006121 GO:0046872
Lja4g4183 996 SUPERFAMILY Calcium ATPase, transduction domain A 450 536 IPR008250 -
Lja4g4183 996 Gene3D - 129 194 - -
Lja4g4183 996 Gene3D - 41 112 - -
Lja4g4183 996 PRINTS H+-transporting ATPase (proton pump) signature 842 858 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g4183 996 PRINTS H+-transporting ATPase (proton pump) signature 870 886 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g4183 996 PRINTS H+-transporting ATPase (proton pump) signature 901 926 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g4183 996 PANTHER ATP7, ISOFORM B 9 989 - -
Lja4g4183 996 Gene3D - 617 927 IPR023214 -
Lja4g4183 996 SUPERFAMILY HAD-like 649 976 IPR036412 -
Lja4g4183 996 SUPERFAMILY HMA, heavy metal-associated domain 39 111 IPR036163 GO:0046872
Lja4g4183 996 ProSitePatterns E1-E2 ATPases phosphorylation site. 652 658 IPR018303 -
Lja4g4183 996 SFLD Haloacid Dehalogenase 632 922 - -
Lja4g4183 996 Gene3D - 750 801 IPR023299 GO:0000166
Lja4g4183 996 Gene3D - 657 749 IPR023299 GO:0000166
Lja4g4183 996 Pfam haloacid dehalogenase-like hydrolase 646 884 - -
Lja4g4183 996 SFLD p-type atpase 632 922 IPR044492 -
Lja4g4183 996 Gene3D - 418 540 - -
Lja4g4183 996 PANTHER HEAVY METAL P-TYPE ATPASE 9 989 - -
Lja4g4183 996 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 749 949 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g4183 996 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 671 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g4183 996 CDD P-type_ATPase_Cu-like 301 966 - -
Lja4g4183 996 ProSitePatterns Heavy-metal-associated domain. 133 162 IPR017969 GO:0046872
Lja4g4183 996 CDD HMA 45 108 IPR006121 GO:0046872
Lja4g4183 996 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872
Lja4g4183 996 Pfam E1-E2 ATPase 431 629 - -
Lja4g4183 996 ProSitePatterns Heavy-metal-associated domain. 48 78 IPR017969 GO:0046872
Lja4g4183 996 SUPERFAMILY Calcium ATPase, transmembrane domain M 383 959 IPR023298 -
Lja4g4183 996 SUPERFAMILY HMA, heavy metal-associated domain 130 197 IPR036163 GO:0046872
Lja4g4183 996 ProSiteProfiles Heavy-metal-associated domain profile. 128 194 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4183 Lja-Chr4 75333317 75338886 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4183 4 75333317 75338886 Lja4g4183 4 75333317 75338886 ECH