Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3864 ATGGGTTTGAGTTCTAAGCAGGTTTGTAGCAGTGGACTTGATTGGAATCAGACACTATTGGAAGCTCAAGACTTGGAGCTCCCAAAGCCAAAACAACAACAACAACAACAAAATCAGCAACCAGAGTCTTTGAAGTGCCCAAGATGTAACTCGTCAAACACCAAATTTTGCTACTACAACAACTACAACAAGTTACAGCCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAATGTTCCTGTTGGTGGGGGAAGGAAGAACAAGAGAGTCAGAAAACCAACCACCACCACAACCACCACAGCCACCACCACCTCTACTAATTGCACCACCCCTGTCACCCCCAACATGGCAATTCAAGCTCTGATTCGTCCACCATCTATGTTTCTACAACAGAATCTGTTGATGAACATCAGAGACTCAGAAAGCAAGGATTTTGGTATTAGTAGTGGTAATGGCATGTTTCTGAGTTCAACTAATTTGCATCTTCCTCCTCAAAACCAGAGCTTTCTCTTCCCTTTTTCAAGCTCAAGCTCTTTTGACACAAACCCTTGTTCATCTTCCAATGTTAATTATAACTATGGGGAAGAGTTTAAGACAATTCATGATGAATCAACTATCAACAGTACTGTAATGCCTAGCACACAGCCATGGGAGATAGCAGCAAAAAGTGGTGGCATGGAAACTTCAACCTATTGGAACTGGGAGGACATTGATTCCTTGGTCTCAACTGATCTGAAAGATCCATGGAATGATTCTGATATCAAACCCTGA 795 0.4314 MGLSSKQVCSSGLDWNQTLLEAQDLELPKPKQQQQQQNQQPESLKCPRCNSSNTKFCYYNNYNKLQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVRKPTTTTTTTATTTSTNCTTPVTPNMAIQALIRPPSMFLQQNLLMNIRDSESKDFGISSGNGMFLSSTNLHLPPQNQSFLFPFSSSSSFDTNPCSSSNVNYNYGEEFKTIHDESTINSTVMPSTQPWEIAAKSGGMETSTYWNWEDIDSLVSTDLKDPWNDSDIKP* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3864 264 Pfam Dof domain, zinc finger 43 96 IPR003851 GO:0003677|GO:0006355
Lja4g3864 264 PANTHER OS06G0284500 PROTEIN 32 225 - -
Lja4g3864 264 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Lja4g3864 264 MobiDBLite consensus disorder prediction 101 118 - -
Lja4g3864 264 MobiDBLite consensus disorder prediction 85 118 - -
Lja4g3864 264 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 225 IPR045174 GO:0003700|GO:0006355
Lja4g3864 264 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3864 Lja-Chr4 71235084 71236908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3864 44 101 C2C2-Dof Transcription Factor Family AT1G28310 81.356 1.65e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja4g3864 zf-Dof 8.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3864 - - mtr:MTR_4g089095 309.301