Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3822 ATGGCAAATCGAAACCTCAAATGCCCACGATGTGATTCATCGGACACTAAATTTTCTTACTTTAACAATTACAACCCCTCACAACCTCGACACTTATGCAAAACGTGTCGTAGAAAATGGACTGTAGGTGGAGCCATAAGGGACATACCCCGTAGGGAAAGGCACACCATTATCGCTTCTTCATCATCTGCCTCTGCAGTTGCACCACCGCCGCCGCAATCACTGTCCCAAGAGGTGGTTGCAAACCAATCGGTAAGTTCTCCTCCGGACCTTATATCCCAACTTTTAAACCAGCTTCTGAATGGAGATACAGCTAATGCGATGGCTTCTTCTGATTTGGCCATCCTACATGAGTGGTTGTGTTCACAACCAATTGGCTACGCATATCATCAAGGCAGTGGTGGTGGTCTAGGGACTTTTTATTTGTCTGCTCTTGCAGGAGTTCAGTCACCAAACGCTTCATCACAAGCACCTTTTAATCAGTCTCTTAATGGAGACGGATTTAATTTTGGCGTCACCACAAACTCTGGTTCTTCGTCTACCTTGGCGCCACAACAATCACTAATTCAGAACCAATTGGTTAGTTCTGCACTACCAGTAACCAACACCTATCATCCTAGTAGTGTTGGTGGTGAGGCCCAGGCTGGGTATTTCACTTCTCTTACCGGATTTCAGCCTATAAATGGTGGCGGTGTTGATTTTGTGGTTTCAAATCAAGCCACAAATTATAGTTCTTCATCAACCTTGGAACCGCCGCAATTATTGGTTCAAAGCCCATTGGTAGGTCCTTCATTACCAACTATCAACCCTTATGATCATGGTATTGTTGGCGGTGGGGCTCTGGCTGGATCTCTGAATGGTGGTGTTAGTGGTGTGGGTTCTTCTGATTTGGTTCTTCAATCTGATTTTAACGCTGCTGGCACTTCTCACTACCCCAGGATAGAATCTTTGTATGATCAAGGTTTCATTCAACCGAGTGTGGGTGATAACAATGTTGTTGCTGCTGTTTCTCACTACCATGATCAATGGCCACAGAGCTTCATCAACACTGATAATAATGTGGCTGCTTCTAATGCTGTTTTGTGGGATGATATGTTTGGTATGACTTCAAATATCAGTGGTGGTAACTTTGATGAGAACTTTACCATGCCAAATCATGGTCCTGGACTCCCAGGCTATGGCACCCCTCCCCCACCTCAAAACTAG 1206 0.4502 MANRNLKCPRCDSSDTKFSYFNNYNPSQPRHLCKTCRRKWTVGGAIRDIPRRERHTIIASSSSASAVAPPPPQSLSQEVVANQSVSSPPDLISQLLNQLLNGDTANAMASSDLAILHEWLCSQPIGYAYHQGSGGGLGTFYLSALAGVQSPNASSQAPFNQSLNGDGFNFGVTTNSGSSSTLAPQQSLIQNQLVSSALPVTNTYHPSSVGGEAQAGYFTSLTGFQPINGGGVDFVVSNQATNYSSSSTLEPPQLLVQSPLVGPSLPTINPYDHGIVGGGALAGSLNGGVSGVGSSDLVLQSDFNAAGTSHYPRIESLYDQGFIQPSVGDNNVVAAVSHYHDQWPQSFINTDNNVAASNAVLWDDMFGMTSNISGGNFDENFTMPNHGPGLPGYGTPPPPQN* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3822 401 ProSitePatterns Zinc finger Dof-type signature. 8 44 IPR003851 GO:0003677|GO:0006355
Lja4g3822 401 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 4 197 - -
Lja4g3822 401 ProSiteProfiles Zinc finger Dof-type profile. 6 60 IPR003851 GO:0003677|GO:0006355
Lja4g3822 401 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 197 IPR045174 GO:0003700|GO:0006355
Lja4g3822 401 Pfam Dof domain, zinc finger 5 51 IPR003851 GO:0003677|GO:0006355
Lja4g3822 401 MobiDBLite consensus disorder prediction 381 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3822 Lja-Chr4 70755441 70756646 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3822 6 137 C2C2-Dof Transcription Factor Family AT2G37590 37.821 3.77e-21 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja4g3822 zf-Dof 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3822 - - lja:Lj4g3v0190020.1 219.55