Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3815 ATGTTGGGTAACTGTGACAAAACAGCGTCTAACAAATGGACACAGAACATGAATGATCATCATCATCATCAGGTCTCAACAACAATGGGTAGTACTTCATCCATTAGGGCTATGGAAAAACCAGGTCAAGAGCTTCTTCAGCTGCAGCAACAAGCACTAAACTGCCCTCGCTGTGACTCAACCAACACCAAATTCTGCTACTACAACAACTACAGTTTGTCACAGCCAAGACACTTTTGCAAAGCTTGCAAGAGATACTGGACTCGAGGTGGGACTCTCAGAAACGTTCCGGTAGGTGGTGGATGTAGAAAAAACAAACGTGTTATCAAAAGACCAACCGGTTCTTCTACTATTGATTCTTCTCCTTCTCCTATTAGTTCCAATTCAAACCCTCCTTCTTCTAACCCTCAAACAACCACTACAAGTCAGATCAACCCTTTGTTCTTCGGGTTACCCGGCGGTGGTAGCGATGTGATGAATCTCCAGTTTCCTAGGTTCAATTCTAGAGTACTTTCCGGTGACGGCGGTTTGGGTTCGGGTTCTGGTTCAGGGTTTGATCTTCTTCAGCCTCAGATGAATAATACTCTTGGGTTTATATCTGGGGAGGTTAATGATAATTGTTACCGGAATAACAATGGGTTTAGTTCAAACAACAACAACAGCAACAACACTCTTGTTTCTAGCTACAGTTCCATGTTTGGTAATTCTTCTCCCTCTAATCCAGTTATGGCTTCCTTGTTGAGTTCTACTCTACGGCAACAGAAATTCAATGCTTTTCAAGGAATGGTCCCATTTGAACAGATTGAAAGTGATGAGGGAGGGGTAGTGGCTGCTTCAAAAGAAGTGAAAGTTGAAGGGCAAAAGTGGAACAACAATAATGATAATGGTAGTGGTGGTGATGGTGGTGGTCTTTGCCAAAACCAGATCGATCAGCATGTGGGTTTGTCTGATCCTTCACTTTATTGGAATAACAACAACAACACAGCAATGGGGTTGGGTGGTTGGAGTGATCAAGTTAGCAATATTGGTCCTTCTGTCACTTCTCTGATCTAG 1053 0.4302 MLGNCDKTASNKWTQNMNDHHHHQVSTTMGSTSSIRAMEKPGQELLQLQQQALNCPRCDSTNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVIKRPTGSSTIDSSPSPISSNSNPPSSNPQTTTTSQINPLFFGLPGGGSDVMNLQFPRFNSRVLSGDGGLGSGSGSGFDLLQPQMNNTLGFISGEVNDNCYRNNNGFSSNNNNSNNTLVSSYSSMFGNSSPSNPVMASLLSSTLRQQKFNAFQGMVPFEQIESDEGGVVAASKEVKVEGQKWNNNNDNGSGGDGGGLCQNQIDQHVGLSDPSLYWNNNNNTAMGLGGWSDQVSNIGPSVTSLI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3815 350 MobiDBLite consensus disorder prediction 111 146 - -
Lja4g3815 350 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Lja4g3815 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 4 331 - -
Lja4g3815 350 Pfam Dof domain, zinc finger 51 107 IPR003851 GO:0003677|GO:0006355
Lja4g3815 350 MobiDBLite consensus disorder prediction 101 146 - -
Lja4g3815 350 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Lja4g3815 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 331 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3815 Lja-Chr4 70670565 70672553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3815 53 151 C2C2-Dof Transcription Factor Family AT1G28310 67.647 1.28e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja4g3815 zf-Dof 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3815 - - cam:101512658 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3815 4 70670565 70672553 Lja4g3815 4 70670565 70672553 ECH
Lja4g3815 4 70670565 70672553 Lja6g3039 6 59199723 59200676 PCT