Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3546 ATGGGTCAGAACCAGAGATCTCTGATCTACGCGTTCGTTTCTCGCGGTAGCGTGATTCTCTCTGAGTACACCGAGTTCAGCGGAAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTACCTGCTTCCAACAACAAATTCACCTACAACTGTGATGGCCACACCTTCAATTACCTCGTCGATAACGGCTACACGTATTGTGTTGTCGCGGATGAGTCGGCTGGAAGGCAGGTGCCTGTGGCTTTTCTGGAGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGGAAGGCCGCCACAGCTGCTCCTAACAGCCTGAACAAGGAATTTGGGCCCAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTGGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGGGAAAAGATTGAGCTTCTGGTTGACAAGACTGAGAACCTCCATCACCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATCCGCCGAAAAATGTGGCTGCAAAATATGAAGATCAAGCTGATTGTGTTGGCGATATTGATAGCCCTGATTCTCATCATAGTCCTTCCCATCGTCCTTCGTAAATGA 660 0.4803 MGQNQRSLIYAFVSRGSVILSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVPVAFLERVKDDFVAKYGGGKAATAAPNSLNKEFGPKLKEHMQYCVDHPEEVSKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKIKLIVLAILIALILIIVLPIVLRK* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3546 219 PRINTS Synaptobrevin signature 137 156 IPR001388 GO:0016021|GO:0016192
Lja4g3546 219 PRINTS Synaptobrevin signature 157 176 IPR001388 GO:0016021|GO:0016192
Lja4g3546 219 PRINTS Synaptobrevin signature 193 212 IPR001388 GO:0016021|GO:0016192
Lja4g3546 219 CDD R-SNARE 132 190 - -
Lja4g3546 219 ProSitePatterns Synaptobrevin signature. 150 169 IPR001388 GO:0016021|GO:0016192
Lja4g3546 219 SUPERFAMILY SNARE-like 8 123 IPR011012 -
Lja4g3546 219 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 1 172 - -
Lja4g3546 219 Pfam Regulated-SNARE-like domain 36 113 IPR010908 -
Lja4g3546 219 Gene3D - 130 215 - -
Lja4g3546 219 Pfam Synaptobrevin 131 216 IPR042855 -
Lja4g3546 219 SUPERFAMILY SNARE fusion complex 127 194 - -
Lja4g3546 219 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 132 192 IPR042855 -
Lja4g3546 219 CDD Longin 9 123 IPR010908 -
Lja4g3546 219 Gene3D Longin domain 2 129 - -
Lja4g3546 219 SMART Longin_2 33 115 IPR010908 -
Lja4g3546 219 ProSiteProfiles Longin domain profile. 12 116 IPR010908 -
Lja4g3546 219 PANTHER SNARE PROTEINS 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3546 Lja-Chr4 66473184 66477350 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3546 4 66473184 66477350 Lja4g3546 4 66473184 66477350 ECH