Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3542 ATGGAAAGAACCGGTTACAGAAACAGAGGCAACCATGGTAATGGTGGTAGAGGAGGAGGGTTTGCTGGACAGAATCAACAGCAACCGGGTGCTGCCGGTGGTGGTGGTGGTAATGGTGGCAGAGGTGGTGGGTTTCAAGGCCAGCAGCAACCGGTTGGTGGCGGTGGTGGCGGTAGAGGAGGGTTTTACGGCCATCAAACTGGTGGTAGCGGTGGTGCTGGTGGCAGAGGTGGTGGTGATGGCAGAGGAGGGTTTCCAGGCCAGTACCAACTTGGTGGTGGTTCTGGTAGCAGAGGGGGAGGGTTTCACGGCCAGCATTACCAACCTGTTGGTGGTGGTGGTGCTAGTGGCAGAGGTGGCGGTGATGGAAGAGGGGGAGGGTTTCAAGGCCAGTACAAACAGCAACGTGGCGGTGGTGGTGGTGGTGGCAGAGGTGGAGGGTTTCAAGGCCAGTACCAACAGCAACCTGGTGGTGGTGGTGGCAGAGGTGGTGGCGGTAGAGGTGGTGCTAGTGACAGAGGGTTTCAATCGCAGCAACAAGAACAACAACTGTGGTCCCAAAAGGGAAACCCCTCTTCCTCCTCCGTCCAAACTAACATCACAATTGGGTCTTCAATCCTTCCTTCAACCTCTAGAACCAACCATCCGAACACTCATCCAGATATTGGAAGGCTTACCATATCAGATGATGCGGCAGTGGAGAAGATTTCACCAGTGCACAGGCCAGACAAAGGGGGAACCCTTGCGGTTCGAAACTGCAAGTTGCATGTGAATCACTTCCGAGTCGGCTTCGACTCTCAGGGAACAATCATGCACTACGATGTGGATGTGAAGCCTTCCTTGCCGCCTCAAAACGGCCGCCCTCAGAAGATCTCGAAGTCTGACCTGTCCTTAATCAGGGACAAGCTGTTTTCCGACGATCCCCAGAGGCTGCCGTTGCTGAAGACAGCCTATGACGGGGAGAAGAACATATTCAGTGCGGTGCTGCTGCCGGAGGAGACTTTCATTGTTGATGTCTCCAAAGGTGAAGATGAAAGGACCATTTCATATGCGGTTACTCTAACCCTGGTGAACAAGCTCCCGCTTCACAAATTAAAGGATTACATCAGCGGCAAAGTGCTTAACATCCCAAGGGACATCTTACAAGGAATGGATTTGGTGGTGAAGGAGAATCCGTCAAAACGAACCGTTTCGTTGGGGCGGTGCTTCTTCCCCACAGAACATCCTTTGATAGAGAGGGACCTCGAGCCTGGCGTGATTGCAATTGGAGGGTTTCAGCATAGTCTCAAGCCCACCTCTCAGGGCATATCAATCTGCCTTGACTATCAGGTTCTGTCTTTCCACAAGAAAATGTCTGTGTTGGATTTTCTTTATGCTCGAATTCAAGGTTTCAATATAGATGAGTTTTGGAAATACAAGAAAGATGTGGAGCTTTCACTTATTGGGCTGAAAGTGAATGTCACTCATAGGAGAACCAAACAGAAATACACTATTGCCAAGTTAACAACTGAAGATACAAGGCATATTACTTTCACTAAGGTGGACCCTGAGGGCCAAAATCCTCCGACGAAAACGACCCTTGTTGCTTACTTTAAAGATAAGCATGGTGTGGACATTACGTACAAGGATATTCCTTCTTTAGTTTTTGTGGGGAGCAAGACGAATTATGTGCCTATGGAGTTGTGTGACTTGGTTGATGGCCAGAGATTCCCGAAAGAGCTTTTGGATAAGTATCCTGCTAATAATTTGAAAAAGATGTCCTTGTGTCGTCCTAGTGAGAGGGAATCAATAATACAGAAGATGATGAAGTCAAATGCTGGACCTTGCGGTGGGGAAATTCTTCAGAATTTTGGAATGACTGTCAAGACCTCCATGACAGATGTGACTGCACGCGTAATTAGGCCTCCGACATTGAAGTTAGGTCATCCAAGTGGTAAGATTATTAGTGAGCCACTGAGGCCTGAGAAAGTTCACTGGAATCTAGTTGAAAAATCAATGGTGGAGGGTAAGCCAGTTGAGTGTTGGGGCATTCTTGACTTCACCAGCAAAGGGCCTACCCGGTGGAAACTAAGAGGCACTCAATTTGTTGAGAACCTTTTGGATAAGTACAACAGAAAATTGGGCATTGACATGAAGGAGCCAGTCTGGTATGAACATTCTGCAATGTGGAAACTTGGGGATTATAATTTACTATATGAATTACTTGAACAAATTAATGACAAGGTTCAAAAAAAATGTGGACAACGACTGCAATTTCTTCTTTGTGTGATGGCTGGCAAAGATCAAGGTTACAAGTGCCTCAAGTGGATTGCTGAGACCAAGGTTGGCTTAGTGACACAATGCTGCTTATCTGGTAATGCTAATGAAGGATCAGACCAATATCTCACTAATCTGGCTCTCAAAATCAATGCAAAAATTGGAGGCACTAATGTGGAGCTTGTTAACCGGCTCCCACACATAGACGGTGAAGGTGATGTTATGTTCATCGGGGCTGATGTGAACCATCCAGGTTCCCGTGATATCAACAGTCCATCAATTGCTGCTGTGGTTGCAACTGTTAACTGGCCTGCTGCAAACCGCTATGCAGCGCGTGTTTGTGCTCAAGGCCACCGGGTTGAGAAAATTGTGAATTTTGGAGAAGTTTGCCTTGATCTTGTTACGTATTATGAAAGTCTGAACAAAGTTAGGCCTGAAAAAATTGTCATCTTTCGTGATGGTGTAAGTGAGAGCCAATTTCTCATGGTTCTTACTGAGGAGCTGCAAGATTTGAGGAGAGCATTTTCTCGTTCGAATTATTTCCCAACCATCACTCTTATTGTAGCCCAAAAGCGACATCAAACTCGTTTGTTTCCTGCTAGTGCAAAGGATGGGGCTCCTAGTGGTAATGTGCTCCCTGGAACAGTTGTTGACACAATCGTCGTGCATCCCTTTGAATTTGACTTTTACCTTTGTAGTCACTATGGAAGTCTCGGTACGAGCAAGCCTACTCACTATCACGTCTTGTGGGATGAGCACAAGTTTAGTTCTGATGATTTGCAGAAACTTATCTATGATATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGATCTTGCTGCTTATAGAGGACGACTATACTATGAAGCGAAGATTGGGGTGCAATCTCCAGGTTCAAATTCATCTTCTTCGTCATCTCCTTTGGCTTCTTCGTCATTTTCTTCAATAGCGTCATATTCGAATGATGCATCTTGTTACAAGCTGCACCCTACTATGGAAAATGTAATGTTCTTCGTTTGA 3306 0.4652 MERTGYRNRGNHGNGGRGGGFAGQNQQQPGAAGGGGGNGGRGGGFQGQQQPVGGGGGGRGGFYGHQTGGSGGAGGRGGGDGRGGFPGQYQLGGGSGSRGGGFHGQHYQPVGGGGASGRGGGDGRGGGFQGQYKQQRGGGGGGGRGGGFQGQYQQQPGGGGGRGGGGRGGASDRGFQSQQQEQQLWSQKGNPSSSSVQTNITIGSSILPSTSRTNHPNTHPDIGRLTISDDAAVEKISPVHRPDKGGTLAVRNCKLHVNHFRVGFDSQGTIMHYDVDVKPSLPPQNGRPQKISKSDLSLIRDKLFSDDPQRLPLLKTAYDGEKNIFSAVLLPEETFIVDVSKGEDERTISYAVTLTLVNKLPLHKLKDYISGKVLNIPRDILQGMDLVVKENPSKRTVSLGRCFFPTEHPLIERDLEPGVIAIGGFQHSLKPTSQGISICLDYQVLSFHKKMSVLDFLYARIQGFNIDEFWKYKKDVELSLIGLKVNVTHRRTKQKYTIAKLTTEDTRHITFTKVDPEGQNPPTKTTLVAYFKDKHGVDITYKDIPSLVFVGSKTNYVPMELCDLVDGQRFPKELLDKYPANNLKKMSLCRPSERESIIQKMMKSNAGPCGGEILQNFGMTVKTSMTDVTARVIRPPTLKLGHPSGKIISEPLRPEKVHWNLVEKSMVEGKPVECWGILDFTSKGPTRWKLRGTQFVENLLDKYNRKLGIDMKEPVWYEHSAMWKLGDYNLLYELLEQINDKVQKKCGQRLQFLLCVMAGKDQGYKCLKWIAETKVGLVTQCCLSGNANEGSDQYLTNLALKINAKIGGTNVELVNRLPHIDGEGDVMFIGADVNHPGSRDINSPSIAAVVATVNWPAANRYAARVCAQGHRVEKIVNFGEVCLDLVTYYESLNKVRPEKIVIFRDGVSESQFLMVLTEELQDLRRAFSRSNYFPTITLIVAQKRHQTRLFPASAKDGAPSGNVLPGTVVDTIVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHKFSSDDLQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEAKIGVQSPGSNSSSSSSPLASSSFSSIASYSNDASCYKLHPTMENVMFFV* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3542 1101 MobiDBLite consensus disorder prediction 205 221 - -
Lja4g3542 1101 SMART DUF1785_2 397 450 IPR014811 -
Lja4g3542 1101 MobiDBLite consensus disorder prediction 172 198 - -
Lja4g3542 1101 Pfam Argonaute linker 2 domain 593 639 IPR032472 -
Lja4g3542 1101 Pfam Argonaute linker 1 domain 399 448 IPR014811 -
Lja4g3542 1101 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 226 1100 - -
Lja4g3542 1101 MobiDBLite consensus disorder prediction 1 198 - -
Lja4g3542 1101 ProSiteProfiles Piwi domain profile. 752 1051 IPR003165 GO:0003676
Lja4g3542 1101 Pfam PAZ domain 470 576 IPR003100 GO:0005515
Lja4g3542 1101 SMART PAZ_2_a_3 451 583 IPR003100 GO:0005515
Lja4g3542 1101 Gene3D paz domain 446 570 - -
Lja4g3542 1101 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 226 1100 - -
Lja4g3542 1101 CDD PAZ_argonaute_like 451 565 - -
Lja4g3542 1101 SMART Piwi_a_2 752 1051 IPR003165 GO:0003676
Lja4g3542 1101 Pfam N-terminal domain of argonaute 251 387 IPR032474 -
Lja4g3542 1101 Gene3D - 822 1101 IPR036397 GO:0003676
Lja4g3542 1101 SUPERFAMILY PAZ domain 447 604 IPR036085 GO:0005515
Lja4g3542 1101 MobiDBLite consensus disorder prediction 205 224 - -
Lja4g3542 1101 Pfam Piwi domain 753 1050 IPR003165 GO:0003676
Lja4g3542 1101 SUPERFAMILY Ribonuclease H-like 736 1051 IPR012337 -
Lja4g3542 1101 CDD Piwi_ago-like 612 1050 IPR045246 -
Lja4g3542 1101 ProSiteProfiles PAZ domain profile. 480 566 IPR003100 GO:0005515
Lja4g3542 1101 Gene3D - 632 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3542 Lja-Chr4 66433516 66440153 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3542 4 66433516 66440153 Lja4g3542 4 66433516 66440153 ECH