Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3510 ATGGTGAAGATTTGTTGCATTGGAGCTGGGTATGTTGGAGGCCCTACCATGGCAGTGATTGCATTGAAGTGTCCCAACATTGAAGTAACCGTGGTGGACATCTCCACGCATCGAATCAACGCGTGGAACAGCGAGCACCTTCCAATCTACGAGCCAGGCCTTGAAGATATAGTGAAGAAATGCAGGGGAAAGAACCTTTTCTTCAGCAGTGAAGTGGAGAAAAATGTTGCTGAGGCTGACATAGTCTTTGTCTCCGTGAACACGCCTACAAAGACTCATGGTCTCGGAGCCGGTAAAGCGGCTGATCTCACATACTGGGAGAGTGCTGCAAGGATGATTGCGGATGTTTCCAAATCGGACAAGATTGTTGTTGAGAAATCAACTGTCCCTGTCAAAACTGCAGAGGCAATTGAGAGGATTTTGACTCATAATAATGGGAAAGGCACCAATTTCACTATTCTTTCAAATCCAGAGTTTCTTGCTGAGGGAACAGCAATTCAGGACCTTTTTAACCCAGATAGGGTCCTCATTGGAGGAAGGGAGACCCCAGATGGGCAAAAGGCTATAAAGGTTCTCAAGGATGTTTATCTTAATTGGGTCCCAGAGGAGAGAATCATCTGCACCAATCTCTGGTCTGCTGAACTCTCAAAGCTAGCTGCCAATGCTTTCCTGGCACAGAGAATATCATCTGTGAATGCAATGTCAGCACTCTGTGAGGCAACTGGTGCTGATGTCTCCCAGGTATCCCACGCAATTGGGACAGACTCAAGGATTGGACCCAAGTTCCTGAGCAGCAGTGTTGGTTTTGGAGGCTCTTGCTTTCAGAAGGACATCTTGAACCTTGTCTACATTTGTGAGTGTAATGGCCTTCCTGAGGTTGCAAATTACTGGAAGCAAGTGATTATGGTGAATGACTACCAGAAGGCGCGGTTCGTAAACCGTGTGGTTTCTTCCATGTTCAACACGGTTTCGGCAAAGAAGATAGCTGTTCTTGGTTTTGCTTTCAAGAAGGATACAGGTGACACTAGGGAAACACCAGCTATTGATGTGTGCAAGGGCTTGCTAGGTGACAGGGCTCGGTTGAGCATATATGATCCTCAGGTCACAGAGGACCAGATGATGAAGGATCTATCAATGAGGAAGTATGATAAGGACCACCCTGCTCATCTTCAACCACCAAGCCCGACATCGATAAAGCAAGTGTCGGTGGTCTGGGATGCTTATGAGGCAGTTAAAGATGCACATGGTGTGTGCATTCTAACAGAATGGGATGAGTTCAGGAAGCTTGATTACCAGAAAGTTTATGACAGCATGCAGAAGCCAGCGTTTTTGTTTGATGGCAGGAATGTTGTGGATGTTAGGGAGCTCAGGAAAATTGGGTTCATTGTTTATTCTATTGGCAAGCCACTAGATCCATGGCTCAAAGACATGCCTTCAGTGGCTTAA 1446 0.464 MVKICCIGAGYVGGPTMAVIALKCPNIEVTVVDISTHRINAWNSEHLPIYEPGLEDIVKKCRGKNLFFSSEVEKNVAEADIVFVSVNTPTKTHGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIERILTHNNGKGTNFTILSNPEFLAEGTAIQDLFNPDRVLIGGRETPDGQKAIKVLKDVYLNWVPEERIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGTDSRIGPKFLSSSVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIMVNDYQKARFVNRVVSSMFNTVSAKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDRARLSIYDPQVTEDQMMKDLSMRKYDKDHPAHLQPPSPTSIKQVSVVWDAYEAVKDAHGVCILTEWDEFRKLDYQKVYDSMQKPAFLFDGRNVVDVRELRKIGFIVYSIGKPLDPWLKDMPSVA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3510 481 PIRSF UDPglc_GDPman_dh 2 468 IPR017476 GO:0016616
Lja4g3510 481 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 481 IPR028356 GO:0003979
Lja4g3510 481 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 1 481 - -
Lja4g3510 481 Gene3D - 210 241 - -
Lja4g3510 481 SMART UDPG_MGDP_dh_C_a_2_a 329 453 IPR014027 GO:0016616|GO:0051287
Lja4g3510 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 187 IPR001732 GO:0016616|GO:0051287
Lja4g3510 481 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 211 310 IPR008927 -
Lja4g3510 481 PIRSF UDPglc_DH_euk 1 481 IPR028356 GO:0003979
Lja4g3510 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 329 452 IPR014027 GO:0016616|GO:0051287
Lja4g3510 481 Gene3D - 242 478 - -
Lja4g3510 481 Gene3D - 1 209 - -
Lja4g3510 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 211 305 IPR014026 GO:0016616|GO:0051287
Lja4g3510 481 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 202 IPR036291 -
Lja4g3510 481 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 316 464 IPR036220 -
Lja4g3510 481 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 449 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3510 Lja-Chr4 66015385 66017411 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3510 4 66015385 66017411 Lja4g3510 4 66015385 66017411 ECH
Lja4g3510 4 66015385 66017411 Lja1g2796 1 33633146 33636257 ECH
Lja4g3510 4 66015385 66017411 Lja2g1555 2 15221385 15224244 ECH
Lja4g3510 4 66015385 66017411 Lja2g1227 2 11619135 11621714 PCT