LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g3509	ATGGAGAGGAGATATGTGTGCAGGTACTGCTTCAAGAGGTTTCCTTGTGGGAAGTCTCTTGGTGGTCACATCAGGACCCATATGACTCAAGAAAGAAATGATCATAATAATGATAATGCTGCTGCAGCTGATAGTGACATGCTCAAGTTGGATATTGGTGAGATCAGAATGAAGCAGCAGAACAAGAAGAGAGATTTGTCATGGTCTCAAACTGGGAGCAGTAGTACTACAATTTATGGTCTCAGAGAGAATCCCAAGAAAACAATGAGGTTTTTGCATCCTGATCATCATGTTGCCACCACCACCTTGGAACAGGATGAGAAGTTCTGCAAAGAATGTGGGAAAGGCTTCCCTTCATTGAAAGCTCTCTGTGGTCACATGGCTAGCCACTCTGACAAACACAAATCTGAAGAAGAGATTGAGAAACTTGTTCTAGTGGATAGTCAATCTGATACTACTGAGACTTGTAATTCAACACCTCAGAGGAGATCCAAGAGAATGAAGAGGTTCAAGTCTCTTAACCCTTCTTCCTCTGTTGTTGATTGTTCTTCACCTGTGTCAGAGGTTGAGCAGGAGCAGGAAGAGGTAGCTATGTGCTTGATGCTGTTGTCCAGAGATTCTAGTCACAGGTTTCATTTCGTTTCTGAATCTTCTGATAACAACTCAGTTGTTCTAGAGCATAGATCATTCTCTCCTTATGGTAACAACTTTGTCTCTAATCAACTTAAGGAGAAGAAGCTTCTAATCAATGATGTCAAGCTTAAGTCTTTTGATAATTCAGATTCTAGATATTACAGATATGGTTCCAAAACCAAAATGGCAGACTATGATGATGTTTCAAATGATGAACTTAAGTGGTCAAAGGTAGGAGAAAAGTCTGGATTTGATGAGGAACATGATTTTGAACTGAATAGGGGAAGAAGCAAATATGCAACTCTATATAAGAAATTAATGTTGGAGGATTTGGAGTATGATAGATCAGATGAAACTTCAAGGAAGTTTGATTCAAGAAAAAGAGCTCAAAATTTTGTTGGCAATTCTATCAAGAAGACAGCTAATGGTTTCACCAATGATGAAGAAATCTATGAGTTCTTGGATGGTGAAAGAGACAGTGACCTTTATTCAACAAATGAGAGTGATGAAAACAGTTCAGAGAGTGATTCTTTTACTGCTCCAAGGTCTCAAAATGGAAAGAAGACCAACAATACTAAGAAGAAGAAGTTGAAGACAAAGAAAAGCAAGGAACATGAGTGCCCAATCTGCTACAGAATTTTCAAGTCAGGACAAGCATTAGGGGGGCATAAAAGATCCCATTTCATTGGAGGTAATAACTCTCAAGAAAACAATAACACTTTGGTGATTAAACAAGGTGCTGTTCCTTGCCTCATTGATCTCAATTTACCTGCTCCTGATGATGATTAA	1422	0.3889	MERRYVCRYCFKRFPCGKSLGGHIRTHMTQERNDHNNDNAAAADSDMLKLDIGEIRMKQQNKKRDLSWSQTGSSSTTIYGLRENPKKTMRFLHPDHHVATTTLEQDEKFCKECGKGFPSLKALCGHMASHSDKHKSEEEIEKLVLVDSQSDTTETCNSTPQRRSKRMKRFKSLNPSSSVVDCSSPVSEVEQEQEEVAMCLMLLSRDSSHRFHFVSESSDNNSVVLEHRSFSPYGNNFVSNQLKEKKLLINDVKLKSFDNSDSRYYRYGSKTKMADYDDVSNDELKWSKVGEKSGFDEEHDFELNRGRSKYATLYKKLMLEDLEYDRSDETSRKFDSRKRAQNFVGNSIKKTANGFTNDEEIYEFLDGERDSDLYSTNESDENSSESDSFTAPRSQNGKKTNNTKKKKLKTKKSKEHECPICYRIFKSGQALGGHKRSHFIGGNNSQENNNTLVIKQGAVPCLIDLNLPAPDDD*	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g3509	473	ProSiteProfiles	Zinc finger C2H2 type domain profile.	108	135	IPR013087	-
	Lja4g3509	473	ProSitePatterns	Zinc finger C2H2 type domain signature.	418	438	IPR013087	-
	Lja4g3509	473	SUPERFAMILY	beta-beta-alpha zinc fingers	109	438	IPR036236	-
	Lja4g3509	473	MobiDBLite	consensus disorder prediction	377	398	-	-
	Lja4g3509	473	ProSiteProfiles	Zinc finger C2H2 type domain profile.	416	438	IPR013087	-
	Lja4g3509	473	ProSitePatterns	Zinc finger C2H2 type domain signature.	110	130	IPR013087	-
	Lja4g3509	473	ProSitePatterns	Zinc finger C2H2 type domain signature.	7	27	IPR013087	-
	Lja4g3509	473	ProSiteProfiles	Zinc finger C2H2 type domain profile.	5	32	IPR013087	-
	Lja4g3509	473	Pfam	C2H2-type zinc finger	4	29	-	-
	Lja4g3509	473	Pfam	C2H2-type zinc finger	110	132	-	-
	Lja4g3509	473	Pfam	C2H2-type zinc finger	416	438	-	-
	Lja4g3509	473	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	3	472	-	-
	Lja4g3509	473	MobiDBLite	consensus disorder prediction	151	170	-	-
	Lja4g3509	473	SMART	c2h2final6	416	438	IPR013087	-
	Lja4g3509	473	SMART	c2h2final6	5	27	IPR013087	-
	Lja4g3509	473	SMART	c2h2final6	108	130	IPR013087	-
	Lja4g3509	473	MobiDBLite	consensus disorder prediction	372	411	-	-
	Lja4g3509	473	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	3	472	-	-
	Lja4g3509	473	SUPERFAMILY	beta-beta-alpha zinc fingers	2	31	IPR036236	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g3509	Lja-Chr4	66009865	66011831	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lja4g3509		zf-C2H2_6	0.00011	CL0361

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g3509	4	66009865	66011831	Lja4g3509	4	66009865	66011831	ECH