Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3503 ATGTTGGTAGCACCATGTTCTCTGTTCCATTCCTCTAAATCTCTTATTCAATTCAGGTCCCTCAGCAGCTACATTGCCTTTACACTTCCTCATCCTCCCACTCTCTACCTCTCTCCCATCTGCAAAAACATCGACACCGTCAAAAAATTCCACGCCTCCCTCATCGTCCATGGCTTCCCCGGCGACACCAAGCTCCTCAGCCTCTACGCCTCCTTCGGCTTCCTCCGCCACGCGCGCCGCCTCTTCGACCACCTCCCCTCCCCAAACCTCCACTCCTTCAAAGCCATGCTCCGCTGGTACTTCCTCAACAACCTCCACTCCGACGTCGTTTCCTTCTACCACCTCACGCGTTACACTCTCGGTTTCTTCCACGACCTCGTCGTTTTCTCCATCGTCCTCAAGGCCTGCTCCGAGCTTCGCGACGTCGTTCAAGCCGCCAGGCTCCACTGCCATGTTATCAAGTCCGGCCCCTCCGACGGGTTTGTCCTCAACGGCCTTGTTGACGCTTACTCGAAATGCGGCCATGTTTGCAGTGCACGCAAAGTGTTCGATGAAATTGCTGAACGGAACGTTGTGTCGTGGACCTCCATGTTCGTTGCGTACGTGCAAAATGATTGCGCGGTGGAAGGGTTGAGGTTGTTTAATAGAATGAGGGAAGGGTTTGTTGATGGGAATGACTTCACCGTTGGGAGCTTGGTCACCGCGTGCACGAAATTGGGGTCGTTGCATCAGGGGAAGTGGGTTCATGGCTATGTTGTTAAGAGTGGGATTCACGTGAATTCTTTCTTGGCAACTAGTCTGTTGAACATGTATGTAAAATGTGGGGACATTGGGGATGCTCGTAAAGTTTTCGATGAAATGTTGACAAGTGATGATGAGCTTGACCTTGTGTCGTGGACTGCTATGATAGTTGGGTACTCGCAGAGAGGACACCCTCTTAAAGCGCTGGAATTGTTCACTGATCGGAATTGGGCAGGGATTTTGCCTAATTCCGTTACCGTTGCGAGTTTGCTCTCTGCGTCTGCTCAACTAAGTAATGCTGTTATGGGAATGTTGCTTCATGGTCTTGTGGTGAAGTGTGGGTTGTTTGATAATACTCCTGTGAGGAATGCTCTTATTGATATGTATGCAAAGTGCCACCTCGTTTCAGATGCTCGTTATGTGTTTGAAACGACGGTCCAAAAGGATGTTGTCTCTTGGAACTCGTTTATTTCTGGTTGTGCTCAGAGTGGCTCTGCTTATGAAGCTCTTGAGATGTTTCAAAGGATGAGATCAGAGTCATTTTCGCCACCAGATGCAGTTACCGTGGTTGGTGTTCTCTCGGCTTGTGCTTCCCTCGGAGCTCTTCCACTTGGTTCTTCCATTCATGCTTTTGCCTTGAAGGATGGCCTCGTGTCATGTAGCATTTATGTTGGGACTGCGCTGCTCAACTTTTATGCAAAATGTGGGGATGCAAAATCCGCTCGTATGGTGTTTGATGGGATGGGAGAGAAGAATGCCGTGACATGGAGTGCAATGATTAGTGGTTATGGAATGCAAGGTGATGGTGTTGGATCCATTGCGCTGTTCAGGGATATGTTGAAGGAGGAATGTGAGCCTAATGAAGTGGTCTTCACTTCTGTATTAGCAGCCTGCAGCCATTCAGGAATGGTTGGTGAAGGGTCCAGGTTATTTCATATGATGTGTCGGGAACTGAACTTTGTTCCTTCCATGAAGCATTATGCGTGTATGGTTGATCTATTGGCACGTGCTGGCAACCTTAAAGAGGCATTGGACTTCATTGACAAAATGCCTGTTCAACCTGGTGTTAGTGTTTTTGGTGCTTATTTGCATGGATGTGGACTTCATTCTGAGTTTGAATTGGGAGAAGTGGCAATTAGGAGAATGTTAGAGTTGCACCCTGATCAAGCTTGTTACTATGTGCTTGTGTCCAACCTTTATGCTTCAGATGGGAGATGGGGCATGGTTAAGCAGGTGAGGGAGATGATAAAGCAAAGGGGATTGAACAAGGTCCCTGGTTGTAGTCTAGTGGAGATAGATCTCAATGATACATATTCCAAAGTGACAATTTTTCCTTAA 2079 0.4805 MLVAPCSLFHSSKSLIQFRSLSSYIAFTLPHPPTLYLSPICKNIDTVKKFHASLIVHGFPGDTKLLSLYASFGFLRHARRLFDHLPSPNLHSFKAMLRWYFLNNLHSDVVSFYHLTRYTLGFFHDLVVFSIVLKACSELRDVVQAARLHCHVIKSGPSDGFVLNGLVDAYSKCGHVCSARKVFDEIAERNVVSWTSMFVAYVQNDCAVEGLRLFNRMREGFVDGNDFTVGSLVTACTKLGSLHQGKWVHGYVVKSGIHVNSFLATSLLNMYVKCGDIGDARKVFDEMLTSDDELDLVSWTAMIVGYSQRGHPLKALELFTDRNWAGILPNSVTVASLLSASAQLSNAVMGMLLHGLVVKCGLFDNTPVRNALIDMYAKCHLVSDARYVFETTVQKDVVSWNSFISGCAQSGSAYEALEMFQRMRSESFSPPDAVTVVGVLSACASLGALPLGSSIHAFALKDGLVSCSIYVGTALLNFYAKCGDAKSARMVFDGMGEKNAVTWSAMISGYGMQGDGVGSIALFRDMLKEECEPNEVVFTSVLAACSHSGMVGEGSRLFHMMCRELNFVPSMKHYACMVDLLARAGNLKEALDFIDKMPVQPGVSVFGAYLHGCGLHSEFELGEVAIRRMLELHPDQACYYVLVSNLYASDGRWGMVKQVREMIKQRGLNKVPGCSLVEIDLNDTYSKVTIFP* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3503 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Lja4g3503 692 Pfam E motif 616 678 IPR046848 -
Lja4g3503 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Lja4g3503 692 PANTHER OS07G0578800 PROTEIN-RELATED 50 688 IPR045215 GO:0003723|GO:0009451
Lja4g3503 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 50 688 - -
Lja4g3503 692 Gene3D Tetratricopeptide repeat domain 103 243 IPR011990 GO:0005515
Lja4g3503 692 Pfam PPR repeat 297 319 IPR002885 -
Lja4g3503 692 Pfam PPR repeat 192 219 IPR002885 -
Lja4g3503 692 Pfam PPR repeat 163 191 IPR002885 -
Lja4g3503 692 Pfam PPR repeat 574 597 IPR002885 -
Lja4g3503 692 Pfam PPR repeat 265 289 IPR002885 -
Lja4g3503 692 Pfam PPR repeat family 395 444 IPR002885 -
Lja4g3503 692 Pfam PPR repeat family 498 546 IPR002885 -
Lja4g3503 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Lja4g3503 692 TIGRFAM PPR: pentatricopeptide repeat domain 501 535 IPR002885 -
Lja4g3503 692 TIGRFAM PPR: pentatricopeptide repeat domain 536 570 IPR002885 -
Lja4g3503 692 TIGRFAM PPR: pentatricopeptide repeat domain 398 430 IPR002885 -
Lja4g3503 692 TIGRFAM PPR: pentatricopeptide repeat domain 574 598 IPR002885 -
Lja4g3503 692 TIGRFAM PPR: pentatricopeptide repeat domain 265 290 IPR002885 -
Lja4g3503 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Lja4g3503 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Lja4g3503 692 Gene3D Tetratricopeptide repeat domain 355 449 IPR011990 GO:0005515
Lja4g3503 692 Gene3D Tetratricopeptide repeat domain 244 354 IPR011990 GO:0005515
Lja4g3503 692 Gene3D Tetratricopeptide repeat domain 450 564 IPR011990 GO:0005515
Lja4g3503 692 Gene3D Tetratricopeptide repeat domain 565 679 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3503 Lja-Chr4 65904513 65906591 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3503 4 65904513 65906591 Lja4g3503 4 65904513 65906591 ECH
Lja4g3503 4 65904513 65906591 Lja4g0354 4 2825433 2831581 PCT