Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3387 ATGGCTATGACCCGAAAGGAAATGGATCGGATCAAGGGTCCATGGAGCCCAGAGGAAGATGAAGCGCTTCAGAAATTGGTGGAGAGGCACGGACCGAGAAACTGGTCCTTGATCAGTAAATCGATTCCGGGCCGATCTGGGAAATCGTGCAGGCTGCGGTGGTGCAACCAGCTCTCACCGCAGGTTGAGCACCGCGCCTTCACTCCGGAGGAGGATGATACCATTATCAGGGCGCACGCTCGGTTCGGGAATAAGTGGGCCACCATCGCTCGCTTACTTTCTGGCCGGACTGATAACGCCATCAAGAACCACTGGAACTCGACGCTTAAGCGGAAGTGCTCGTCTATCTTCGCTGCAGACGATCTCGCCGCCGGTGGTGGTGGTGGTGATTTCTGTCCTCAGCCGCTCAAGCGATCCGCTAGCGCCGGGTTACCGGGAAGTCCTGCCTGGTCTGACGTGAGTGATTCTGGCTGTCACGTGGCGGTTTCACCCTCGCACGTGTTCCGTCCGGTGCCGGTTCGGCCGTATGTTGAAACGGCGTCGTCGTGTGAGGATGACGACGGACCTCCTACTTCGCTGTCGCTGTCTCTCCCCGGGGTGGACTCTGCTGAGGTGACGAATCGAGCGGCGCCGGTGATGGCTGCTCCGATTTGTCCTGCGCCGGTAACGGTGGTGCCGGCTCAGGTGACGGCGGCGCAGGAGGGTGTGTTTGGTGCGGGTAATTTCAGCTCGGAGTTGATGGCGGTGATGCATGAGATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCAGCAGAATGGGGTGTGTTTTCAGGGTGTTGATGGGTTCAGGAACGTGGCGGTGAAGCGAATGGGGATTAGCAGGGTTGATTCTTAA 879 0.5825 MAMTRKEMDRIKGPWSPEEDEALQKLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIFAADDLAAGGGGGDFCPQPLKRSASAGLPGSPAWSDVSDSGCHVAVSPSHVFRPVPVRPYVETASSCEDDDGPPTSLSLSLPGVDSAEVTNRAAPVMAAPICPAPVTVVPAQVTAAQEGVFGAGNFSSELMAVMHEMIRKEVRSYMEQQQNGVCFQGVDGFRNVAVKRMGISRVDS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3387 292 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lja4g3387 292 Gene3D - 65 121 - -
Lja4g3387 292 SMART sant 63 111 IPR001005 -
Lja4g3387 292 SMART sant 11 60 IPR001005 -
Lja4g3387 292 Pfam Myb-like DNA-binding domain 15 72 - -
Lja4g3387 292 PANTHER MYB PROTEIN-RELATED 1 264 - -
Lja4g3387 292 Gene3D - 11 63 - -
Lja4g3387 292 CDD SANT 14 56 IPR001005 -
Lja4g3387 292 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Lja4g3387 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Lja4g3387 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Lja4g3387 292 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Lja4g3387 292 CDD SANT 66 109 IPR001005 -
Lja4g3387 292 PANTHER MYB TRANSCRIPTION FACTOR 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3387 Lja-Chr4 64101993 64103624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3387 4 291 MYB Transcription Factor Family AT4G37260 52.147 5.55e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g3387 Myb_DNA-bind_6 2.2e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0300 2 2758008 2759889 Lja4g3387 4 64101993 64103624 ECH
Lja1g4130 1 52410876 52411578 Lja4g3387 4 64101993 64103624 ECH
Lja5g3113 5 60836478 60837663 Lja4g3387 4 64101993 64103624 ECH
Lja4g3387 4 64101993 64103624 Lja4g3387 4 64101993 64103624 ECH
Lja4g3387 4 64101993 64103624 Lja2g0300 2 2758008 2759889 PCT