Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3300 ATGATCCAAGAACTGTTGGATGGTGGTGCAAGCCTCATAGCTGGAGAAAGAAAATCCTCCAATAATCCAGTAGGAGGAGTTTTGCTACCATCACCACCATCTCAAACCCCTTCTTCCACAACAACCACTCACACCACCACATCTACACCTACAACCACCACCGTCACCGCCACCACCACTGCATCAGAGAACCAAAACCTGCGGTGCCCTCGATGCGACTCCTCGAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGCCGCCGGTACTGGACCAAAGGCGGCGCTCTCCGGAATGTCCCCATCGGTGGCGGCTGCCGGAAAAACAAGACCATCGGAGTAGCAAACTCTGTGGCGGCCAAGACAACCACCAGCGCAACCAGGATGAAAACGGTTGCGTCGGAGCTCGGAAGATCACCGCCATCAGGGCTTGGCCATGGGTCATTCGAAGGCGAACATGTGCTGCCGCCTCCGACTCATGGCCAAATCCTGTGGGGCTCTCCCCAGAACTCTCATCTCTTGGCTTTGCTAAGAGCTAGCCAAGCCCAAAACCAAAATCAAAGCCCTAACCCTAACCCTATTGCAGTGAAGGAAGAAGGTAACAACAACTTCATGGGCCACTTGGTGACTGACCCTTTGGTTTCAAATGGTCTTCTGAATCATCAATACAGAAGCCTAGGCTATGATGCTCATGCTAGTGTTGCTGGCCATGCTCCTACACTTGGGTTATGCAGTTCATTTTTTAGGACCAATATTCAAGACCAAGCTCAACAGCAACAACACAATGGAGGCTTTGTGCTTGGATTACATAACCACAACAGTGGAATCCAAGAGCTTTACCAGAAGCTGAGATCTTCAGCTTCAGCTAATAACTACTGCGGCGATGCCTCGCCGGTATTTCTCGGGAACGTGGCGGCTTCTAGTTATTCCTCTTCCATGTCCAACATTTTGGAGCCAAATTCAGTTGCAGGAGGAGGTGAATTGGGGTACTGGAATCCTCCAACGCTTTTGTGGTCTGATCTTCCAACCACAAATGGTGCATATCAGTGA 1080 0.5065 MIQELLDGGASLIAGERKSSNNPVGGVLLPSPPSQTPSSTTTTHTTTSTPTTTTVTATTTASENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKTIGVANSVAAKTTTSATRMKTVASELGRSPPSGLGHGSFEGEHVLPPPTHGQILWGSPQNSHLLALLRASQAQNQNQSPNPNPIAVKEEGNNNFMGHLVTDPLVSNGLLNHQYRSLGYDAHASVAGHAPTLGLCSSFFRTNIQDQAQQQQHNGGFVLGLHNHNSGIQELYQKLRSSASANNYCGDASPVFLGNVAASSYSSSMSNILEPNSVAGGGELGYWNPPTLLWSDLPTTNGAYQ* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3300 359 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 22 357 - -
Lja4g3300 359 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
Lja4g3300 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 357 IPR045174 GO:0003700|GO:0006355
Lja4g3300 359 Pfam Dof domain, zinc finger 65 121 IPR003851 GO:0003677|GO:0006355
Lja4g3300 359 MobiDBLite consensus disorder prediction 14 64 - -
Lja4g3300 359 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Lja4g3300 359 MobiDBLite consensus disorder prediction 24 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3300 Lja-Chr4 62224253 62225948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3300 29 120 C2C2-Dof Transcription Factor Family AT5G65590 62.366 1.95e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja4g3300 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3300 - - lja:Lj0g3v0158989.1 428.328